Browse Element(s) Details


Os.18390.1.S1_a_at

Description gb:AF317882.1
DB_XREF= gi:22023156
GEN=TF1
TID=Os.18390.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18390 (NCBI UniGene Cluster)
DEF=Oryza sativa transcription factor 1 (TF1) mRNA, complete cds.
PROD=transcription factor 1
FL= gb:AK071723.1 gb:AK059864.1 gb:AF317882.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5789011/11START domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g57840Os.33787.1.S1_at11/111+33775154..33776194expressed protein
LOC_Os01g57854Os.27505.1.S1_at11/111+33780283..33786927Pectinesterase family protein, expressed
LOC_Os01g57870Os.42318.1.S1_at11/111+33787267..33790602NB-ARC domain containing protein, expressed
LOC_Os01g57870Os.42318.2.S1_x_at11/111+33787267..33790602NB-ARC domain containing protein, expressed
LOC_Os01g57880Os.45893.1.S1_at10/111+33795421..33796840Plastocyanin-like domain containing protein, expressed
LOC_Os01g57890Os.18390.1.S1_a_at11/111+33798748..33805306START domain containing protein, expressed
LOC_Os01g57900Os.32277.1.S1_at11/111+33805833..33808190pentatricopeptide, putative, expressed
LOC_Os01g57910OsAffx.11639.1.S1_at11/111+33808778..33811037YOR3513c, putative
LOC_Os01g57920OsAffx.11640.1.S1_at11/111+33811634..33814672F-box domain containing protein, expressed
LOC_Os01g57930Os.34845.2.S1_x_at11/111+33816133..33819807CDP-alcohol phosphatidyltransferase family protein, expressed
LOC_Os01g57930Os.34845.1.S1_at10/111+33816133..33819807CDP-alcohol phosphatidyltransferase family protein, expressed
LOC_Os01g57940Os.33418.1.S1_at11/111+33821456..33823540Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os01g57940OsAffx.23830.2.S1_at1/111+33821456..33823540Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os01g57944OsAffx.32334.1.S1_x_at11/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57944Os.26455.2.S1_s_at11/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57944OsAffx.32335.1.S1_x_at11/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57944OsAffx.32334.1.S1_s_at11/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57944OsAffx.32333.1.S1_x_at11/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57944OsAffx.32331.1.S1_x_at11/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57944Os.26688.1.S3_s_at10/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57944OsAffx.32332.1.S1_x_at9/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57944Os.26455.1.S1_at2/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009911biological_processpositive regulation of flower development
GO:0009913biological_processepidermal cell differentiation
GO:0009957biological_processepidermal cell fate specification
GO:0010062biological_processnegative regulation of trichoblast fate
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18390.1.S1_a_at--747--671Chr01:33804699..33804723 (25 bp)
ATGACCATGGGCTTCCAGATTCCGG
LOC_Os01g57890
Os.18390.1.S1_a_at--387--1251Chr01:33804715..33804739 (25 bp)
AGATTCCGGTGAAGCTCGCCAGTGG
LOC_Os01g57890
Os.18390.1.S1_a_at--601--7651Chr01:33804739..33804763 (25 bp)
GGGATCGCATGTATTCCCGGTCTGC
LOC_Os01g57890
Os.18390.1.S1_a_at--1007--4971Chr01:33804765..33804789 (25 bp)
GCATCGGCAATCAGGCTCATGACTG
LOC_Os01g57890
Os.18390.1.S1_a_at--566--5451Chr01:33804821..33804845 (25 bp)
GAACGAGCATTCTGGTATCTACGGG
LOC_Os01g57890
Os.18390.1.S1_a_at--172--2531Chr01:33805142..33805166 (25 bp)
AACTTATATCGTGTCTTTGCTGTAA
LOC_Os01g57890
Os.18390.1.S1_a_at--913--1171Chr01:33805173..33805197 (25 bp)
AGTATGCGCCTGATGGATGTCGACT
LOC_Os01g57890
Os.18390.1.S1_a_at--321--771Chr01:33805189..33805213 (25 bp)
ATGTCGACTGCCGTGTACCGATGCA
LOC_Os01g57890
Os.18390.1.S1_a_at--283--6991Chr01:33805203..33805227 (25 bp)
GTACCGATGCAGTTTGCTTCGCAGA
LOC_Os01g57890
Os.18390.1.S1_a_at--565--5991Chr01:33805226..33805250 (25 bp)
GAGACGCGGATACATTTGCTATCGT
LOC_Os01g57890
Os.18390.1.S1_a_at--1046--10271Chr01:33805240..33805264 (25 bp)
TTTGCTATCGTATGGATGCTCCTTT
LOC_Os01g57890
Target Sequence 
ATGACCATGGGCTTCCAGATTCCGGTGAAGCTCGCCAGTGGGGATCGCATGTATTCCCGGTCTGCGGCATCGGCAATCAG
GCTCATGACTGACACCATTGCCCTCGTCAAGAAGACGCTGATGAACGAGCATTCTGGTATCTACGGGGTTAGCCCGTTCC
ACCCCTAGATTCAGAAAAACACCAGAGGGAGAAAAGGGAGGTCCGTGTGCAGATAAAAATCAAGAACATGCGAAGGGGAT
TCATCGGCTCCGATCACCCTGCATCTCCCAGAATTTGCTGAATTAATTAGAACTTTAAGGTTGTGTTAACAACCTGTAAT
AATGTTTTTAAGGCCAAACTTATATCGTGTCTTTGCTGTAATAATGTAGTATGCGCCTGATGGATGTCGACTGCCGTGTA
CCGATGCAGTTTGCTTCGCAGAGACGCGGATACATTTGCTATCGTATGGATGCTCCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18390.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis