Browse Element(s) Details


Os.42318.1.S1_at

Description gb:AK120325.1
DB_XREF= gi:37989948
TID=Os.42318.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.42318 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) disease resistance protein-like (P0415A04.27), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013057M10, full insert sequence.
FL= gb:AK120325.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5787011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g57810NANA1+33762717..33765923hypothetical protein
LOC_Os01g57830Os.14919.1.S1_at2/111+33769654..33773560hypothetical protein
LOC_Os01g57830OsAffx.29313.1.S1_at1/111+33769654..33773560hypothetical protein
LOC_Os01g57840Os.33787.1.S1_at11/111+33775154..33776194expressed protein
LOC_Os01g57854Os.27505.1.S1_at11/111+33780283..33786927Pectinesterase family protein, expressed
LOC_Os01g57870Os.42318.1.S1_at11/111+33787267..33790602NB-ARC domain containing protein, expressed
LOC_Os01g57870Os.42318.2.S1_x_at11/111+33787267..33790602NB-ARC domain containing protein, expressed
LOC_Os01g57880Os.45893.1.S1_at10/111+33795421..33796840Plastocyanin-like domain containing protein, expressed
LOC_Os01g57890Os.18390.1.S1_a_at11/111+33798748..33805306START domain containing protein, expressed
LOC_Os01g57900Os.32277.1.S1_at11/111+33805833..33808190pentatricopeptide, putative, expressed
LOC_Os01g57910OsAffx.11639.1.S1_at11/111+33808778..33811037YOR3513c, putative
LOC_Os01g57920OsAffx.11640.1.S1_at11/111+33811634..33814672F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006499biological_processN-terminal protein myristoylation
GO:0006952biological_processdefense response
GO:0009598biological_processdetection of pathogenic bacteria
GO:0009626biological_processhypersensitive response
GO:0005886cellular_componentplasma membrane
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.42318.1.S1_at--865--7271Chr01:33787542..33787566 (25 bp)
GTCCACTGCACTGATTCCAGTTTTA
LOC_Os01g57870
Os.42318.1.S1_at--1122--8791Chr01:33787531..33787555 (25 bp)
TGATTCCAGTTTTAGTTACCACTTA
LOC_Os01g57870
Os.42318.1.S1_at--702--10372Chr09:5931174..5931193 (20 bp)
TTTTTTGTCATCTGCTACTGTTGCT
NONE
Os.42318.1.S1_at--864--9912Chr06:23471823..23471846 (24 bp)
TACTGTTGCTTCTCTGATCGTTGTG
NONE
Os.42318.1.S1_at--967--6391Chr01:33787471..33787495 (25 bp)
GATCGTTGTGTAGTTCAGGTCTGTG
LOC_Os01g57870
Os.42318.1.S1_at--292--6931Chr01:33787462..33787486 (25 bp)
GTAGTTCAGGTCTGTGTTTCCTCAC
LOC_Os01g57870
Os.42318.1.S1_at--427--7431Chr01:33787449..33787473 (25 bp)
GTGTTTCCTCACTTGTATGATCTTA
LOC_Os01g57870
Os.42318.1.S1_at--780--7471Chr01:33787416..33787440 (25 bp)
GTGGTTTTACTACCTTTTTGCACAG
LOC_Os01g57870
Os.42318.1.S1_at--147--1391Chr01:33787393..33787417 (25 bp)
AGACCATGTTCCACACACGTCAGGT
LOC_Os01g57870
Os.42318.1.S1_at--514--2191Chr01:33787381..33787405 (25 bp)
ACACACGTCAGGTACGGCAGTAGGA
LOC_Os01g57870
Os.42318.1.S1_at--263--9871Chr01:33787303..33787327 (25 bp)
TACAGAGCAGCACCAAAAGGACCTA
LOC_Os01g57870
Target Sequence 
GTCCACTGCACTGATTCCAGTTTTAGTTACCACTTAACCATTTTTTTGTCATCTGCTACTGTTGCTTCTCTGATCGTTGT
GTAGTTCAGGTCTGTGTTTCCTCACTTGTATGATCTTACAAGTTGAGTGGTTTTACTACCTTTTTGCACAGACCATGTTC
CACACACGTCAGGTACGGCAGTAGGAAAACTTAGTATCATTAGTACTGGATGTATAGATGTGAGTATGTAACCTGTGAAT
ACAGAGCAGCACCAAAAGGACCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.42318.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis