Browse Element(s) Details


Os.27505.1.S1_at

Description gb:AK109763.1
DB_XREF= gi:32994972
TID=Os.27505.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.27505 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative pectin esterase (P0415A04.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-146-H03, full insert sequence.
FL= gb:AK109763.1 gb:AK120977.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5785411/11Pectinesterase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g57800OsAffx.7789.1.S1_x_at2/111+33755449..33762264retrotransposon protein, putative, unclassified
LOC_Os01g57800OsAffx.8279.1.S1_at1/111+33755449..33762264retrotransposon protein, putative, unclassified
LOC_Os01g57800Os.52731.1.S1_at1/111+33755449..33762264retrotransposon protein, putative, unclassified
LOC_Os01g57800OsAffx.31867.1.S1_x_at1/111+33755449..33762264retrotransposon protein, putative, unclassified
LOC_Os01g57810NANA1+33762717..33765923hypothetical protein
LOC_Os01g57830Os.14919.1.S1_at2/111+33769654..33773560hypothetical protein
LOC_Os01g57830OsAffx.29313.1.S1_at1/111+33769654..33773560hypothetical protein
LOC_Os01g57840Os.33787.1.S1_at11/111+33775154..33776194expressed protein
LOC_Os01g57854Os.27505.1.S1_at11/111+33780283..33786927Pectinesterase family protein, expressed
LOC_Os01g57870Os.42318.1.S1_at11/111+33787267..33790602NB-ARC domain containing protein, expressed
LOC_Os01g57870Os.42318.2.S1_x_at11/111+33787267..33790602NB-ARC domain containing protein, expressed
LOC_Os01g57880Os.45893.1.S1_at10/111+33795421..33796840Plastocyanin-like domain containing protein, expressed
LOC_Os01g57890Os.18390.1.S1_a_at11/111+33798748..33805306START domain containing protein, expressed
LOC_Os01g57900Os.32277.1.S1_at11/111+33805833..33808190pentatricopeptide, putative, expressed
LOC_Os01g57910OsAffx.11639.1.S1_at11/111+33808778..33811037YOR3513c, putative
LOC_Os01g57920OsAffx.11640.1.S1_at11/111+33811634..33814672F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0030599molecular_functionpectinesterase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27505.1.S1_at--968--1171Chr01:33786489..33786513 (25 bp)
AGTACTCGCGGACGGTGTACATGCT
LOC_Os01g57854
Os.27505.1.S1_at--206--7451Chr01:33786503..33786527 (25 bp)
GTGTACATGCTGTCCTACCTGGACT
LOC_Os01g57854
Os.27505.1.S1_at--1008--7831Chr01:33786654..33786678 (25 bp)
GGTACCACGTCATCACGGACCAGAG
LOC_Os01g57854
Os.27505.1.S1_at--208--1371Chr01:33786675..33786699 (25 bp)
AGAGCGTCGCCATGCAGTTCACCGT
LOC_Os01g57854
Os.27505.1.S1_at--937--9611Chr01:33786708..33786732 (25 bp)
TCATCCAGGGCGGAAACTGGCTCAA
LOC_Os01g57854
Os.27505.1.S1_at--285--5531Chr01:33786720..33786744 (25 bp)
GAAACTGGCTCAAGGCCACCGGCGT
LOC_Os01g57854
Os.27505.1.S1_at--193--10231Chr01:33786783..33786807 (25 bp)
TATTGATCTGCCATCTTGTACGAGT
LOC_Os01g57854
Os.27505.1.S1_at--9--3631Chr01:33786797..33786821 (25 bp)
CTTGTACGAGTTGCCATGTTCGCAT
LOC_Os01g57854
Os.27505.1.S1_at--473--651Chr01:33786820..33786844 (25 bp)
ATGCACCCTGTTGGTTCCAATACGG
LOC_Os01g57854
Os.27505.1.S1_at--655--9931Chr01:33786840..33786864 (25 bp)
TACGGAGTACTAATCATCGTCATCA
LOC_Os01g57854
Os.27505.1.S1_at--1075--4831Chr01:33786890..33786914 (25 bp)
GCTAATGGCGCAGATCAGATCAATC
LOC_Os01g57854
Target Sequence 
AGTACTCGCGGACGGTGTACATGCTGTCCTACCTGGACTCGCACGTCGACCCGAGGGGTTGGCTCGAGTGGAACGGCGCC
GACTTCGCGCTCAAGACGCTCTTCTACGGCGAGTACCAGAACCAGGGCCCCGGCGCCAGCACGGCCGGCCGCGTCAACTG
GCCCGGGTACCACGTCATCACGGACCAGAGCGTCGCCATGCAGTTCACCGTGGGGCAGTTCATCCAGGGCGGAAACTGGC
TCAAGGCCACCGGCGTCAACTACAACGAGGGGCTCTGATTAGAAGGGTAGAGATTATTGATCTGCCATCTTGTACGAGTT
GCCATGTTCGCATGCACCCTGTTGGTTCCAATACGGAGTACTAATCATCGTCATCATCAGGAAATAAAAGCAATAAAGCA
TGCTAATGGCGCAGATCAGATCAATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27505.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis