Browse Element(s) Details


Os.32277.1.S1_at

Description gb:AK105428.1
DB_XREF= gi:32990637
TID=Os.32277.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.32277 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0415A04.32 (P0415A04.32), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-124-D06, full insert sequence.
FL= gb:AK073287.1 gb:AK105428.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5790011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g57854Os.27505.1.S1_at11/111+33780283..33786927Pectinesterase family protein, expressed
LOC_Os01g57870Os.42318.1.S1_at11/111+33787267..33790602NB-ARC domain containing protein, expressed
LOC_Os01g57870Os.42318.2.S1_x_at11/111+33787267..33790602NB-ARC domain containing protein, expressed
LOC_Os01g57880Os.45893.1.S1_at10/111+33795421..33796840Plastocyanin-like domain containing protein, expressed
LOC_Os01g57890Os.18390.1.S1_a_at11/111+33798748..33805306START domain containing protein, expressed
LOC_Os01g57900Os.32277.1.S1_at11/111+33805833..33808190pentatricopeptide, putative, expressed
LOC_Os01g57910OsAffx.11639.1.S1_at11/111+33808778..33811037YOR3513c, putative
LOC_Os01g57920OsAffx.11640.1.S1_at11/111+33811634..33814672F-box domain containing protein, expressed
LOC_Os01g57930Os.34845.2.S1_x_at11/111+33816133..33819807CDP-alcohol phosphatidyltransferase family protein, expressed
LOC_Os01g57930Os.34845.1.S1_at10/111+33816133..33819807CDP-alcohol phosphatidyltransferase family protein, expressed
LOC_Os01g57940Os.33418.1.S1_at11/111+33821456..33823540Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os01g57940OsAffx.23830.2.S1_at1/111+33821456..33823540Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os01g57944OsAffx.32334.1.S1_x_at11/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57944Os.26455.2.S1_s_at11/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57944OsAffx.32335.1.S1_x_at11/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57944OsAffx.32334.1.S1_s_at11/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57944OsAffx.32333.1.S1_x_at11/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57944OsAffx.32331.1.S1_x_at11/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57944Os.26688.1.S3_s_at10/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57944OsAffx.32332.1.S1_x_at9/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57944Os.26455.1.S1_at2/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57950OsAffx.32337.1.S1_x_at11/111+33830617..3383146050S ribosomal protein L14, putative
LOC_Os01g57950Os.26688.1.S2_s_at10/111+33830617..3383146050S ribosomal protein L14, putative

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006397biological_processmRNA processing
GO:0009570cellular_componentchloroplast stroma
GO:0003729molecular_functionmRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32277.1.S1_at--640--7571Chr01:33806401..33806425 (25 bp)
GGGCTGATTTCAACCATGAGTTAAT
LOC_Os01g57900
Os.32277.1.S1_at--442--2411Chr01:33806270..33806294 (25 bp)
AAACAAGCATTCATGGAGACCCACA
LOC_Os01g57900
Os.32277.1.S1_at--708--4952Chr05:21681360..21681410 (25 bp)
GCATTTAAGAATTGGGCTGGTCTCA
NONE
Os.32277.1.S1_at--234--8351Chr01:33806172..33806196 (25 bp)
GGCTGGTCTCAATGCATGACATTAT
LOC_Os01g57900
Os.32277.1.S1_at--526--5091Chr01:33806111..33806135 (25 bp)
GCACGTATCTGAGATGGCATCCCAT
LOC_Os01g57900
Os.32277.1.S1_at--321--4971Chr01:33806095..33806119 (25 bp)
GCATCCCATAGTCCTCTTGGAAGTA
LOC_Os01g57900
Os.32277.1.S1_at--73--9831Chr01:33806072..33806096 (25 bp)
TAACAAGCAGCGGACCTTCAGAGAT
LOC_Os01g57900
Os.32277.1.S1_at--345--2531Chr01:33805949..33805973 (25 bp)
AACTATATAGGCTGACCTGTCTCTG
LOC_Os01g57900
Os.32277.1.S1_at--581--8931Chr01:33805937..33805961 (25 bp)
TGACCTGTCTCTGTACTAGTTCTAG
LOC_Os01g57900
Os.32277.1.S1_at--512--3711Chr01:33805922..33805946 (25 bp)
CTAGTTCTAGTCATTTACGCTGATG
LOC_Os01g57900
Os.32277.1.S1_at--670--9951Chr01:33805907..33805931 (25 bp)
TACGCTGATGTAATCTCCAAACCAT
LOC_Os01g57900
Target Sequence 
GGGCTGATTTCAACCATGAGTTAATTGATGCATTTCTGTATGCTTTAGTCAAAGGTGGATTTTTTGATATGGCAATGCAA
GTGATTGAGAAAGCACAAGAGTTGAAAATATTTTTGGATAAGTGGAGACACAAACAAGCATTCATGGAGACCCACAAAAA
ACTGAAAGTGGCAAAGCTGAGAAAGCGGAATTTCAGGAAAATGGAAGCTCTGATTGCATTTAAGAATTGGGCTGGTCTCA
ATGCATGACATTATAATCTTTTTATCAGTCTATCATGACTGATTTTAATGGCACGTATCTGAGATGGCATCCCATAGTCC
TCTTGGAAGTAACAAGCAGCGGACCTTCAGAGATGAACAAGTGAGGGGTTTTGTCATCATGTCAAATTTTGATAAGGTTA
GGAAGGCCGGTGCGCTTTCGGTTTCTTCTTTTACTTAAAGTAATACATGTTTAACTATATAGGCTGACCTGTCTCTGTAC
TAGTTCTAGTCATTTACGCTGATGTAATCTCCAAACCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32277.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis