Browse Element(s) Details


Os.33787.1.S1_at

Description gb:AK073030.1
DB_XREF= gi:32983053
TID=Os.33787.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.33787 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative Nuclear transport factor 2 (P0415A04.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023144D17, full insert sequence.
FL= gb:AK073030.1 gb:AK098941.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5784011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g57790OsAffx.19069.1.S1_at2/111+33749911..33753571retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g57800OsAffx.7789.1.S1_x_at2/111+33755449..33762264retrotransposon protein, putative, unclassified
LOC_Os01g57800OsAffx.8279.1.S1_at1/111+33755449..33762264retrotransposon protein, putative, unclassified
LOC_Os01g57800Os.52731.1.S1_at1/111+33755449..33762264retrotransposon protein, putative, unclassified
LOC_Os01g57800OsAffx.31867.1.S1_x_at1/111+33755449..33762264retrotransposon protein, putative, unclassified
LOC_Os01g57810NANA1+33762717..33765923hypothetical protein
LOC_Os01g57830Os.14919.1.S1_at2/111+33769654..33773560hypothetical protein
LOC_Os01g57830OsAffx.29313.1.S1_at1/111+33769654..33773560hypothetical protein
LOC_Os01g57840Os.33787.1.S1_at11/111+33775154..33776194expressed protein
LOC_Os01g57854Os.27505.1.S1_at11/111+33780283..33786927Pectinesterase family protein, expressed
LOC_Os01g57870Os.42318.1.S1_at11/111+33787267..33790602NB-ARC domain containing protein, expressed
LOC_Os01g57870Os.42318.2.S1_x_at11/111+33787267..33790602NB-ARC domain containing protein, expressed
LOC_Os01g57880Os.45893.1.S1_at10/111+33795421..33796840Plastocyanin-like domain containing protein, expressed
LOC_Os01g57890Os.18390.1.S1_a_at11/111+33798748..33805306START domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33787.1.S1_at--511--631Chr01:33775486..33775510 (25 bp)
ATGCTCTCCTTCGAGGGACACATGG
LOC_Os01g57840
Os.33787.1.S1_at--32--1591Chr01:33775670..33775818 (25 bp)
AGCTCAGGTTCAGCCAGATGTTTCA
LOC_Os01g57840
Os.33787.1.S1_at--562--1871Chr01:33775830..33775854 (25 bp)
ACGAGCAGGGAAGCTTCTTCGTGCA
LOC_Os01g57840
Os.33787.1.S1_at--617--5271Chr01:33775855..33775879 (25 bp)
GAATGACATATTCCGGCTCAACTAC
LOC_Os01g57840
Os.33787.1.S1_at--1124--7311Chr01:33775920..33775944 (25 bp)
GTGCTAGGATGCTTTGGGCCCATGT
LOC_Os01g57840
Os.33787.1.S1_at--760--10631Chr01:33775988..33776012 (25 bp)
TTCGCTTTCATCCTCTGTACTTTTA
LOC_Os01g57840
Os.33787.1.S1_at--321--9471Chr01:33776001..33776025 (25 bp)
TCTGTACTTTTACCTTCGTTCATGT
LOC_Os01g57840
Os.33787.1.S1_at--257--6311Chr01:33776048..33776072 (25 bp)
GATGACCGTGTTGTGTTGTGCCTTC
LOC_Os01g57840
Os.33787.1.S1_at--149--8711Chr01:33776064..33776088 (25 bp)
TGTGCCTTCTCCTGATTGTTAAGTA
LOC_Os01g57840
Os.33787.1.S1_at--587--5591Chr01:33776105..33776129 (25 bp)
GAAATCTCCATGCATGGGCTACCGG
LOC_Os01g57840
Os.33787.1.S1_at--362--7591Chr01:33776120..33776144 (25 bp)
GGGCTACCGGTTTACATCCATTTAG
LOC_Os01g57840
Target Sequence 
ATGCTCTCCTTCGAGGGACACATGGTGGCCGGCGCCGAGGAGATCGGCCGGAAGCTGTTGGGGCTGCCCTTCGAGCAATG
CCGGCACGCCGTCTGCACCGTCGACTGCCAACCCACGCCGTCCTTCCCGGGAGGCATCCTCGTCTTCGTCAGTGGCAACC
TCCAGCTCGCCGGCGAGGAGCACCAGCTCAGGTTCAGCCAGATGTTTCAGCTGGTGCCCAACGAGCAGGGAAGCTTCTTC
GTGCAGAATGACATATTCCGGCTCAACTACGGCTAGCAGCAGGTTGCGTGTGGCTGCCGAAAGGAACAGGGTGCTAGGAT
GCTTTGGGCCCATGTGGATGCGAGATTGCGAGAAGCTTNTCCGGGCCGTCTCTACCGTTTCGCTTTCATCCTCTGTACTT
TTACCTTCGTTCATGTNGCATCGTAGAATAAGTTGGGCGATGACCGTGTTGTGTTGTGCCTTCTCCTGATTGTTAAGTAA
TTCCGTGGAACGATTGAAATCTCCATGCATGGGCTACCGGTTTACATCCATTTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33787.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis