Browse Element(s) Details


OsAffx.19069.1.S1_at

Description tigr:9639.m02673
TID=OsAffx.19069.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2955011/11hypothetical protein
LOC_Os01g577902/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g295401/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g29510OsAffx.31202.1.S1_at11/1111+16615145..16618901Protein kinase domain containing protein
LOC_Os11g29520Os.54766.1.S1_at11/1111+16623902..16629488NB-ARC domain containing protein, expressed
LOC_Os11g29520Os.54766.1.S1_s_at11/1111+16623902..16629488NB-ARC domain containing protein, expressed
LOC_Os11g29520OsAffx.14387.2.S1_s_at11/1111+16623902..16629488NB-ARC domain containing protein, expressed
LOC_Os11g29520Os.54638.1.S1_at9/1111+16623902..16629488NB-ARC domain containing protein, expressed
LOC_Os11g29520OsAffx.14387.2.S1_at8/1111+16623902..16629488NB-ARC domain containing protein, expressed
LOC_Os11g29530OsAffx.29419.3.S1_at2/1111+16633186..16639146retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g29540OsAffx.13772.1.S1_x_at1/1111+16640249..16641487hypothetical protein
LOC_Os11g29550OsAffx.19069.1.S1_at11/1111+16642440..16644195hypothetical protein
LOC_Os11g29560Os.50255.1.S1_at3/1111+16646891..16649818retrotransposon protein, putative, unclassified
LOC_Os11g29570NANA11+16650148..16655953retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g29580OsAffx.19070.1.S1_at9/1111+16660016..16660264hypothetical protein
LOC_Os11g29589NANA11+16664185..16664436NA
LOC_Os11g29600OsAffx.23573.1.S1_s_at3/1111+16666295..16666629RING zinc finger protein, putative
LOC_Os11g29610NANA11+16668206..16672462retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19069.1.S1_at--1042--4749Chr12:3052382..3052406 (25 bp)
ATCTGAAGATAGAACCACCTCGCCC
NONE
OsAffx.19069.1.S1_at--876--45318Chr11:16643636..16643660 (25 bp)
GCCCGCCATTTGCTACGAGAAGAGG
LOC_Os11g29550
OsAffx.19069.1.S1_at--310--871Chr11:16643690..16643714 (25 bp)
AGGCCATCCCGAAGCAGGAAATCGA
LOC_Os11g29550
OsAffx.19069.1.S1_at--764--8151Chr11:16643706..16643730 (25 bp)
GGAAATCGACACATCCGGATATCTT
LOC_Os11g29550
OsAffx.19069.1.S1_at--666--101511Chr12:19531166..19531187 (22 bp)
TATCTTTTTAGGTTCCATCCAGCGC
NONE
OsAffx.19069.1.S1_at--952--9711Chr11:16643774..16643798 (25 bp)
TCAAGAAACGACTCTACCCCAATGT
LOC_Os11g29550
OsAffx.19069.1.S1_at--82--2738Chr11:16643909..16643933 (25 bp)
AAGAATGTAATCCTCAACCGCAACC
LOC_Os11g29550
OsAffx.19069.1.S1_at--599--1011Chr11:16643954..16643978 (25 bp)
AGGTTCAATACCTCTTGTTTCTCGC
LOC_Os11g29550
OsAffx.19069.1.S1_at--417--6011Chr11:16643999..16644023 (25 bp)
GAGAGCATCGTCGTCCTGCAGTTTC
LOC_Os11g29550
OsAffx.19069.1.S1_at--436--5031Chr11:16644016..16644040 (25 bp)
GCAGTTTCTTCAGGGACGCATTTGT
LOC_Os11g29550
OsAffx.19069.1.S1_at--70--75318Chr11:16644045..16644069 (25 bp)
GTGGACTTGTCGAGATCCATCCCCG
LOC_Os11g29550
Target Sequence 
ATCTGAAGATAGAACCACCTCGCCCGCCATTTGCTACGAGAAGAGGGGCACTAGAAGGGGATGTATCGCAACTTCAGGCC
ATCCCGAAGCAGGAAATCGACACATCCGGATATCTTTTTAGGTTCCATCCAGCGCAACTCATAGTAGAAGCGGAAGAGGT
CAAGAAACGACTCTACCCCAATGTAGGCCTCACAAAGATAGGAGAAGATACTGAGGAAGGAGATGGAATTGGGGTTCAGA
TGGAGCAAGGAAAGGCCGTAGAAATTCAAGACGAGAAGAAGGAAGAAAACCGTAAAGAATGTAATCCTCAACCGCAACCA
TGCGGCCCAGGACAGGTTCAGGTTCAATACCTCTTGTTTCTCGCTCCATGGTCCCGCGGCCAGGGAGAGCATCGTCGTCC
TGCAGTTTCTTCAGGGACGCATTTGTGGAGGTGGACTTGTCGAGATCCATCCCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19069.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis