Browse Element(s) Details


OsAffx.30137.1.S1_at

Description tigr:9637.m02951
TID=OsAffx.30137.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3420010/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g34160OsAffx.30135.1.S1_at11/119+20162189..20167295NB-ARC domain containing protein, expressed
LOC_Os09g34170NANA9+20171841..20172152hypothetical protein
LOC_Os09g34180Os.6745.1.S1_at11/119+20179233..20182541FH protein NFH2, putative, expressed
LOC_Os09g34190Os.9110.1.S1_at11/119+20182857..20185813thioesterase family protein, expressed
LOC_Os09g34200Os.50484.1.S1_at11/119+20186675..20191104F-box domain containing protein
LOC_Os09g34200OsAffx.30137.1.S1_at10/119+20186675..20191104F-box domain containing protein
LOC_Os09g34214OsAffx.32335.1.S1_x_at3/119+20196229..20203371UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os09g34214Os.26688.1.S3_s_at1/119+20196229..20203371UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os09g34230Os.10546.1.S1_s_at11/119+20213904..20215700UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os09g34230OsAffx.30138.1.S1_at11/119+20213904..20215700UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30137.1.S1_at--674--91NONE
ATTCGCGATCTCAAGCGGTTGGGAA
NONE
OsAffx.30137.1.S1_at--1086--3371Chr09:20190630..20190654 (25 bp)
CAGCCGACAACTGGGAGGCAGCGAC
LOC_Os09g34200
OsAffx.30137.1.S1_at--1143--6191Chr09:20190644..20190668 (25 bp)
GAGGCAGCGACGTAGCCGTCCCCGT
LOC_Os09g34200
OsAffx.30137.1.S1_at--900--6191Chr09:20190760..20190784 (25 bp)
GAGGCTACGGGCTGCAGCTACTCGC
LOC_Os09g34200
OsAffx.30137.1.S1_at--653--8871Chr09:20190772..20190796 (25 bp)
TGCAGCTACTCGCAGCGGAGACGAC
LOC_Os09g34200
OsAffx.30137.1.S1_at--216--51Chr09:20190797..20190821 (25 bp)
ATTGCTGTTGGTGGCACGAACAAGA
LOC_Os09g34200
OsAffx.30137.1.S1_at--951--1872Chr09:20190893..20190917 (25 bp)
ACGATGGCGGCGGAAATTGGCATAT
LOC_Os09g34200
OsAffx.30137.1.S1_at--959--10131Chr09:20190915..20190939 (25 bp)
TATGCGGCAGAAATCAGCGGTGACG
LOC_Os09g34200
OsAffx.30137.1.S1_at--77--1871Chr09:20190940..20190964 (25 bp)
ACGACGTTGAGGATCCTCAGCTGCT
LOC_Os09g34200
OsAffx.30137.1.S1_at--932--1592Chr09:20190958..20190982 (25 bp)
AGCTGCTGCTCACGCCATCGAGATG
LOC_Os09g34200
OsAffx.30137.1.S1_at--904--8371Chr09:20190993..20191017 (25 bp)
GGCGATGGTGGATCCTCAGCTACAT
LOC_Os09g34200
Target Sequence 
ATTCGCGATCTCAAGCGGTTGGGAAGTGGATCTGGGCGGCAGCCGACAACTGGGAGGCAGCGACGTAGCCGTCCCCGTCC
CTCGTCGATTCCCCCGTGCTGTCGGCGGGCGAGCGGGCAAGCGGGCAGGAGCGGACGTGCGGGCGAAACGGATGACGGTG
TCGGCGGCGGAGGCTACGGGCTGCAGCTACTCGCAGCGGAGACGACATTGCTGTTGGTGGCACGAACAAGAGGCGGAGGC
GATGCCGCGGGCTGCGGCTACTCGCGCCGGCAAGGGAGGCGGCGGGCGAACAGGTGGATCTGACGATGGCGGCGGAAATT
GGCATATGCGGCAGAAATCAGCGGTGACGACGACGTTGAGGATCCTCAGCTGCTGCTCACGCCATCGAGATGTGGCGGCG
ACGGCGATGGTGGATCCTCAGCTACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30137.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis