Browse Element(s) Details


Os.10546.1.S1_s_at

Description gb:AU183565
DB_XREF= gi:13919322
DB_XREF=AU183565
CLONE=C60058
TID=Os.10546.1
CNT=8
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.10546 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_172059.1 (A.thaliana) putative indole-3-acetate beta-glucosyltransferase (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3423011/11UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g34200Os.50484.1.S1_at11/119+20186675..20191104F-box domain containing protein
LOC_Os09g34200OsAffx.30137.1.S1_at10/119+20186675..20191104F-box domain containing protein
LOC_Os09g34214OsAffx.32335.1.S1_x_at3/119+20196229..20203371UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os09g34214Os.26688.1.S3_s_at1/119+20196229..20203371UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os09g34230Os.10546.1.S1_s_at11/119+20213904..20215700UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os09g34230OsAffx.30138.1.S1_at11/119+20213904..20215700UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os09g34240OsAffx.17993.1.S1_at10/119+20218376..20219892hypothetical protein
LOC_Os09g34250Os.48216.1.S1_at11/119+20221695..20223511UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os09g34260OsAffx.10665.1.S1_x_at2/119+20223751..20224881hypothetical protein
LOC_Os09g34260Os.55138.1.S1_x_at2/119+20223751..20224881hypothetical protein
LOC_Os09g34260OsAffx.20707.2.S1_x_at1/119+20223751..20224881hypothetical protein
LOC_Os09g34260Os.55476.1.S1_at1/119+20223751..20224881hypothetical protein
LOC_Os09g34270OsAffx.28370.1.S1_x_at11/119+20228189..20233470hypothetical protein
LOC_Os09g34270OsAffx.28370.1.S1_at9/119+20228189..20233470hypothetical protein
LOC_Os09g34270OsAffx.20187.1.S1_at3/119+20228189..20233470hypothetical protein
LOC_Os09g34280Os.9097.1.A1_at11/119+20235938..20240135ankyrin repeat family protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10546.1.S1_s_at--24--2611Chr09:20215188..20215212 (25 bp)
AACGCCAGGTACATCGAGGACGTGT
LOC_Os09g34230
Os.10546.1.S1_s_at--108--6071Chr09:20215410..20215434 (25 bp)
GAGTTCCTGTCCAAGTATCGGTTGC
LOC_Os09g34230
Os.10546.1.S1_s_at--892--3211Chr09:20215421..20215445 (25 bp)
CAAGTATCGGTTGCCGCCGCATGGG
LOC_Os09g34230
Os.10546.1.S1_s_at--101--6691Chr09:20215430..20215454 (25 bp)
GTTGCCGCCGCATGGGACCAAATGA
LOC_Os09g34230
Os.10546.1.S1_s_at--1006--7631Chr09:20215443..20215467 (25 bp)
GGGACCAAATGATTTTTCGGCGCAT
LOC_Os09g34230
Os.10546.1.S1_s_at--119--10611Chr09:20215458..20215482 (25 bp)
TTCGGCGCATATGTTATGCTTTGCT
LOC_Os09g34230
Os.10546.1.S1_s_at--940--10131Chr09:20215472..20215496 (25 bp)
TATGCTTTGCTTTCTCATTGTCGTT
LOC_Os09g34230
Os.10546.1.S1_s_at--377--4891Chr09:20215480..20215504 (25 bp)
GCTTTCTCATTGTCGTTTGTGGTCA
LOC_Os09g34230
Os.10546.1.S1_s_at--915--3131Chr09:20215508..20215532 (25 bp)
AATTAATTGATGGATCGCCTCGCCA
LOC_Os09g34230
Os.10546.1.S1_s_at--275--6391Chr09:20215520..20215544 (25 bp)
GATCGCCTCGCCATGAATTTGGAAC
LOC_Os09g34230
Os.10546.1.S1_s_at--123--3711Chr09:20215566..20215590 (25 bp)
CTATGGTTGTTGAGTTGGATGATGT
LOC_Os09g34230
Target Sequence 
AACGCCAGGTACATCGAGGACGTGTGGCGCGTCGGCGTGCGGGTTCGCGGCGGCGGCGGCGGCGACGGCGGCGCGGTGGT
GAGGAGGGAGGAGGTGGAGAGGAAGGTGAGGGAGGTGATGGAGGGGGAGAGGAGCAAGGAGTTCATGAGGAACGCGGCGA
GCTGGAGCTCCAAGGCGAGGAGCGCCATGGGCGAAGGTGGCAGCTCGGACAGGAACATCGCCGAGTTCCTGTCCAAGTAT
CGGTTGCCGCCGCATGGGACCAAATGATTTTTCGGCGCATATGTTATGCTTTGCTTTCTCATTGTCGTTTGTGGTCAATT
AATTAATTGATGGATCGCCTCGCCATGAATTTGGAACANNNNNANANNNNANNNANNGCTATGGTTGTTGAGTTGGATGA
TGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10546.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis