Browse Element(s) Details


Os.48216.1.S1_at

Description gb:AK064395.1
DB_XREF= gi:32974413
TID=Os.48216.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.48216 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-108-G04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-108-G04, full insert sequence.
FL= gb:AK121725.1 gb:AK064395.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3425011/11UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g34214OsAffx.32335.1.S1_x_at3/119+20196229..20203371UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os09g34214Os.26688.1.S3_s_at1/119+20196229..20203371UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os09g34230Os.10546.1.S1_s_at11/119+20213904..20215700UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os09g34230OsAffx.30138.1.S1_at11/119+20213904..20215700UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os09g34240OsAffx.17993.1.S1_at10/119+20218376..20219892hypothetical protein
LOC_Os09g34250Os.48216.1.S1_at11/119+20221695..20223511UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os09g34260OsAffx.10665.1.S1_x_at2/119+20223751..20224881hypothetical protein
LOC_Os09g34260Os.55138.1.S1_x_at2/119+20223751..20224881hypothetical protein
LOC_Os09g34260OsAffx.20707.2.S1_x_at1/119+20223751..20224881hypothetical protein
LOC_Os09g34260Os.55476.1.S1_at1/119+20223751..20224881hypothetical protein
LOC_Os09g34270OsAffx.28370.1.S1_x_at11/119+20228189..20233470hypothetical protein
LOC_Os09g34270OsAffx.28370.1.S1_at9/119+20228189..20233470hypothetical protein
LOC_Os09g34270OsAffx.20187.1.S1_at3/119+20228189..20233470hypothetical protein
LOC_Os09g34280Os.9097.1.A1_at11/119+20235938..20240135ankyrin repeat family protein, putative, expressed
LOC_Os09g34290OsAffx.30140.1.S1_at11/119+20241008..20242592hypothetical protein
LOC_Os09g34300Os.10518.1.S1_at11/119+20243173..20248047Inositol 1, 3, 4-trisphosphate 5/6-kinase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48216.1.S1_at--77--7431Chr09:20222953..20222977 (25 bp)
GTGTACCAATGGTGGCGGTACCGCA
LOC_Os09g34250
Os.48216.1.S1_at--855--7491Chr09:20222978..20223002 (25 bp)
GTGGTCAGACCAGACAATGAATGCC
LOC_Os09g34250
Os.48216.1.S1_at--1155--8671Chr09:20223174..20223198 (25 bp)
TGTGAAGGTGGCAGCTCCGACAAAA
LOC_Os09g34250
Os.48216.1.S1_at--656--9371Chr09:20223205..20223229 (25 bp)
TCGAGTTCATCGCTAAGATTGGAGT
LOC_Os09g34250
Os.48216.1.S1_at--668--5971Chr09:20223251..20223275 (25 bp)
GAGACAGGTGGATTCGTCGGCCATT
LOC_Os09g34250
Os.48216.1.S1_at--925--6571Chr09:20223261..20223285 (25 bp)
GATTCGTCGGCCATTGGTCATGTTT
LOC_Os09g34250
Os.48216.1.S1_at--954--8591Chr09:20223275..20223299 (25 bp)
TGGTCATGTTTCCTTTCTCATTTGA
LOC_Os09g34250
Os.48216.1.S1_at--940--6531Chr09:20223298..20223322 (25 bp)
GATTTCACTATCATGTTTTCAGATG
LOC_Os09g34250
Os.48216.1.S1_at--143--3111Chr09:20223327..20223351 (25 bp)
AATAGTCGTTATCTGTCGCTCTAGT
LOC_Os09g34250
Os.48216.1.S1_at--272--7231Chr09:20223341..20223365 (25 bp)
GTCGCTCTAGTCTTTCTTTTTCTAG
LOC_Os09g34250
Os.48216.1.S1_at--90--411Chr09:20223474..20223498 (25 bp)
ATCAGTCATCAGTCAATGCATTAAT
LOC_Os09g34250
Target Sequence 
GTGTACCAATGGTGGCGGTACCGCAGTGGTCAGACCAGACAATGAATGCCAAGTACATTGAGGACGTGTGGCGTGTTGGG
GTGCGGGTGCGGCCCGACGGCGAGGGGGTGGTGAGGAAGGAGGAGTTGGAGAGGTGTGTGAGGGAGGTGATGGAAGGGGA
GAGGAGCAAGGAGTTCATGGAGAATGCTAATGGTTGGAAGGAGAAGGCCAGAAATGCCATGTGTGAAGGTGGCAGCTCCG
ACAAAAATATCGTCGAGTTCATCGCTAAGATTGGAGTGGNCCGAAAATTTAAATGATTGAGACAGGTGGATTCGTCGGCC
ATTGGTCATGTTTCCTTTCTCATTTGATTTCACTATCATGTTTTCAGATGCAATAATAGTCGTTATCTGTCGCTCTAGTC
TTTCTTTTTCTAGTATAGGATCAAATATTTNGCGATATCTTTTTCCCNCTATATTCAATGAAATGGGCACANTCGGATGC
CGATTCGTTAANAAAATATTTTACGATATGTATAGTAAAATAATCAGTCATCAGTCAATGCATTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48216.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis