Browse Element(s) Details


Os.10518.1.S1_at

Description gb:AK102571.1
DB_XREF= gi:32987780
TID=Os.10518.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.10518 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033097M05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033097M05, full insert sequence.
FL= gb:AK102571.1 gb:AK064305.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3430011/11Inositol 1, 3, 4-trisphosphate 5/6-kinase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g34240OsAffx.17993.1.S1_at10/119+20218376..20219892hypothetical protein
LOC_Os09g34250Os.48216.1.S1_at11/119+20221695..20223511UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os09g34260OsAffx.10665.1.S1_x_at2/119+20223751..20224881hypothetical protein
LOC_Os09g34260Os.55138.1.S1_x_at2/119+20223751..20224881hypothetical protein
LOC_Os09g34260OsAffx.20707.2.S1_x_at1/119+20223751..20224881hypothetical protein
LOC_Os09g34260Os.55476.1.S1_at1/119+20223751..20224881hypothetical protein
LOC_Os09g34270OsAffx.28370.1.S1_x_at11/119+20228189..20233470hypothetical protein
LOC_Os09g34270OsAffx.28370.1.S1_at9/119+20228189..20233470hypothetical protein
LOC_Os09g34270OsAffx.20187.1.S1_at3/119+20228189..20233470hypothetical protein
LOC_Os09g34280Os.9097.1.A1_at11/119+20235938..20240135ankyrin repeat family protein, putative, expressed
LOC_Os09g34290OsAffx.30140.1.S1_at11/119+20241008..20242592hypothetical protein
LOC_Os09g34300Os.10518.1.S1_at11/119+20243173..20248047Inositol 1, 3, 4-trisphosphate 5/6-kinase family protein, expressed
LOC_Os09g34310NANA9+20251801..20254012expressed protein
LOC_Os09g34320Os.5209.2.S1_at10/119+20257935..20259483expressed protein
LOC_Os09g34330NANA9+20268382..20269236Helix-loop-helix DNA-binding domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0046853biological_processinositol and derivative phosphorylation
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0003824molecular_functioncatalytic activity
GO:0004428molecular_functioninositol or phosphatidylinositol kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10518.1.S1_at--46--7211Chr09:20243655..20243839 (25 bp)
GTCGTTGTTCAAGAGTCCAGTGGAG
LOC_Os09g34300
Os.10518.1.S1_at--731--8511Chr09:20243618..20243642 (25 bp)
TGGACCTAAACTATCTTCCGTCTTT
LOC_Os09g34300
Os.10518.1.S1_at--1006--6691Chr09:20243586..20243610 (25 bp)
GTTCCTGACAATGTGGCGATGCCTG
LOC_Os09g34300
Os.10518.1.S1_at--538--4631Chr09:20243571..20243595 (25 bp)
GCGATGCCTGCATTCTGGGATGCAA
LOC_Os09g34300
Os.10518.1.S1_at--237--2891Chr09:20243446..20243470 (25 bp)
AAGGGAGACCGCTCTTTGGGATCGA
LOC_Os09g34300
Os.10518.1.S1_at--877--7651Chr09:20243429..20243453 (25 bp)
GGGATCGAATTAACTCTGACCTCTA
LOC_Os09g34300
Os.10518.1.S1_at--751--3411Chr09:20243403..20243427 (25 bp)
CAGAGGTTGCTTGTCACTTAGATTT
LOC_Os09g34300
Os.10518.1.S1_at--1097--1971Chr09:20243373..20243397 (25 bp)
ACTGCTTGCGATGAACATTGCTGGC
LOC_Os09g34300
Os.10518.1.S1_at--189--5051Chr09:20243350..20243374 (25 bp)
GCAGAGATGTACACCTAGCGCTAAT
LOC_Os09g34300
Os.10518.1.S1_at--192--1471Chr09:20243261..20243285 (25 bp)
AGCAACTCTCCCGTGTTAAACTAAT
LOC_Os09g34300
Os.10518.1.S1_at--877--151Chr09:20243203..20243227 (25 bp)
ATTTTGGCCACTCTGTAAACACTCT
LOC_Os09g34300
Target Sequence 
GTCGTTGTTCAAGAGTCCAGTGGAGACCATGTCATAGTGGACCTAAACTATCTTCCGTCTTTCAAAGAAGTTCCTGACAA
TGTGGCGATGCCTGCATTCTGGGATGCAATCAAGCAGTCATATGAGTCAAGGAAGCAGATGACACAAACTTAGTTCAAGT
TCTCAAGCAAATGATTTGCATACAGGCGACAACATTCATACTAATTGGAAAGGGAGACCGCTCTTTGGGATCGAATTAAC
TCTGACCTCTAGCAGAGGTTGCTTGTCACTTAGATTTGTGGAACTGCTTGCGATGAACATTGCTGGCAGAGATGTACACC
TAGCGCTAATAATTTGGGGAACAAAGTCTTTTGTGTTCCCTGAGTTAAAACCCTTAGCAGAATAAGCATGCAGAAGCAAC
TCTCCCGTGTTAAACTAATTATTCTGTTGTGCAGTGTACCATTTACATGTGAATTTTGGCCACTCTGTAAACACTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10518.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis