Browse Element(s) Details


Os.5209.2.S1_at

Description gb:AK072714.1
DB_XREF= gi:32982737
TID=Os.5209.2
CNT=17
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5209 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-182-H01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023142B15, full insert sequence.
FL= gb:AK072714.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3432010/11expressed protein
LOC_Os12g076701/11Endomembrane protein 70 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g34270OsAffx.28370.1.S1_x_at11/119+20228189..20233470hypothetical protein
LOC_Os09g34270OsAffx.28370.1.S1_at9/119+20228189..20233470hypothetical protein
LOC_Os09g34270OsAffx.20187.1.S1_at3/119+20228189..20233470hypothetical protein
LOC_Os09g34280Os.9097.1.A1_at11/119+20235938..20240135ankyrin repeat family protein, putative, expressed
LOC_Os09g34290OsAffx.30140.1.S1_at11/119+20241008..20242592hypothetical protein
LOC_Os09g34300Os.10518.1.S1_at11/119+20243173..20248047Inositol 1, 3, 4-trisphosphate 5/6-kinase family protein, expressed
LOC_Os09g34310NANA9+20251801..20254012expressed protein
LOC_Os09g34320Os.5209.2.S1_at10/119+20257935..20259483expressed protein
LOC_Os09g34330NANA9+20268382..20269236Helix-loop-helix DNA-binding domain containing protein
LOC_Os09g34340Os.52532.1.S1_x_at10/119+20273188..20273980expressed protein
LOC_Os09g34340Os.51320.1.S1_x_at5/119+20273188..20273980expressed protein
LOC_Os09g34340Os.54448.1.S1_x_at3/119+20273188..20273980expressed protein
LOC_Os09g34846NANA9+20283087..20283313NA

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0006944biological_processmembrane fusion
GO:0009524cellular_componentphragmoplast
GO:0016021cellular_componentintegral to membrane
GO:0005486molecular_functiont-SNARE activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5209.2.S1_at--216--8791Chr09:20258484..20258508 (25 bp)
TGTTCGCCAGGGTGAAGGGCCTCAC
LOC_Os09g34320
Os.5209.2.S1_at--719--4531Chr09:20258328..20258352 (25 bp)
GCCCGACACGTGTTCGTCTCAAAAA
LOC_Os09g34320
Os.5209.2.S1_at--897--10511Chr09:20258283..20258307 (25 bp)
TTCAAAGCTCCATTCTTACACAAGA
LOC_Os09g34320
Os.5209.2.S1_at--35--9651Chr09:20258172..20258196 (25 bp)
TCAGGTGAGCAGATGACATGTTCTT
LOC_Os09g34320
Os.5209.2.S1_at--559--6731Chr09:20258153..20258177 (25 bp)
GTTCTTGTCGGTATTACTTGTTTCA
LOC_Os09g34320
Os.5209.2.S1_at--487--10071Chr09:20258049..20258073 (25 bp)
TAGTGAGACCAAGTATTTGCCGTTG
LOC_Os09g34320
Os.5209.2.S1_at--268--213Chr12:3855245..3855264 (20 bp)
ATTTGCCGTTGGTTTCCGTCTCTCT
LOC_Os12g07670
Os.5209.2.S1_at--272--4251Chr09:20258020..20258044 (25 bp)
CCGTCTCTCTGAATACGTGGGTATT
LOC_Os09g34320
Os.5209.2.S1_at--619--10211Chr09:20257999..20258023 (25 bp)
TATTAACGCGTGGTGCATGTACATA
LOC_Os09g34320
Os.5209.2.S1_at--556--8751Chr09:20257982..20258006 (25 bp)
TGTACATAGCGGTGCGCGTGCGTAT
LOC_Os09g34320
Os.5209.2.S1_at--957--4651NONE
GCGTGCGTATGCGTCTTTCGTAAAG
NONE
Target Sequence 
TGTTCGCCAGGGTGAAGGGCCTCACCGTCCGGCCGCACGGCCAGCACTGGGTCCTCTCCCCGAAGCCGCCGCTCCGCCGC
GACGGCCGGTGACTCCTCGCCGGCGAAAAGCTCGCCGTCGCCGGCGGGGCCACGCACTCGGCGACGTGACGTCGGCGCCC
GACACGTGTTCGTCTCAAAAACTCCCAACCACCACCCTTTTTTCAAAGCTCCATTCTTACACAAGAATCAATTCAAGAAT
TTGGTTCTTCTACTTTGTACTGTGAATTTATACCAAATTCATACACACGAGATCATACGTACTACAATGTATTCAGGTGA
GCAGATGACATGTTCTTGTCGGTATTACTTGTTTCATTTTTTTTGTTTATAACTACCTAATTTATCCATTCAAGAGTACA
TTAATTTCAATCAAACAATTAGGTAAGTTAAATTCTAGTGAGACCAAGTATTTGCCGTTGGTTTCCGTCTCTCTGAATAC
GTGGGTATTAACGCGTGGTGCATGTACATAGCGGTGCGCGTGCGTATGCGTCTTTCGTAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5209.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis