Browse Element(s) Details


Os.9097.1.A1_at

Description gb:AK100826.1
DB_XREF= gi:32986035
TID=Os.9097.1
CNT=13
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.9097 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023122L09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023122L09, full insert sequence.
FL= gb:AK100826.1 gb:AK060782.1 gb:AK065660.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3428011/11ankyrin repeat family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g34230Os.10546.1.S1_s_at11/119+20213904..20215700UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os09g34230OsAffx.30138.1.S1_at11/119+20213904..20215700UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os09g34240OsAffx.17993.1.S1_at10/119+20218376..20219892hypothetical protein
LOC_Os09g34250Os.48216.1.S1_at11/119+20221695..20223511UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os09g34260OsAffx.10665.1.S1_x_at2/119+20223751..20224881hypothetical protein
LOC_Os09g34260Os.55138.1.S1_x_at2/119+20223751..20224881hypothetical protein
LOC_Os09g34260OsAffx.20707.2.S1_x_at1/119+20223751..20224881hypothetical protein
LOC_Os09g34260Os.55476.1.S1_at1/119+20223751..20224881hypothetical protein
LOC_Os09g34270OsAffx.28370.1.S1_x_at11/119+20228189..20233470hypothetical protein
LOC_Os09g34270OsAffx.28370.1.S1_at9/119+20228189..20233470hypothetical protein
LOC_Os09g34270OsAffx.20187.1.S1_at3/119+20228189..20233470hypothetical protein
LOC_Os09g34280Os.9097.1.A1_at11/119+20235938..20240135ankyrin repeat family protein, putative, expressed
LOC_Os09g34290OsAffx.30140.1.S1_at11/119+20241008..20242592hypothetical protein
LOC_Os09g34300Os.10518.1.S1_at11/119+20243173..20248047Inositol 1, 3, 4-trisphosphate 5/6-kinase family protein, expressed
LOC_Os09g34310NANA9+20251801..20254012expressed protein
LOC_Os09g34320Os.5209.2.S1_at10/119+20257935..20259483expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9097.1.A1_at--401--8751Chr09:20239512..20239536 (25 bp)
TGTACAATGGCAATCGGCACCGCGA
LOC_Os09g34280
Os.9097.1.A1_at--677--10851Chr09:20239552..20239576 (25 bp)
TTGGGTCCATGTGCTACTGCATTAT
LOC_Os09g34280
Os.9097.1.A1_at--1103--1971Chr09:20239567..20239591 (25 bp)
ACTGCATTATCGCTCACAGGATGGA
LOC_Os09g34280
Os.9097.1.A1_at--843--1151Chr09:20239633..20239657 (25 bp)
AGTCGTGGTCCATATCAGTCGATTC
LOC_Os09g34280
Os.9097.1.A1_at--947--7191Chr09:20239650..20239674 (25 bp)
GTCGATTCGGATACAGAGCTACTGA
LOC_Os09g34280
Os.9097.1.A1_at--743--351Chr09:20239716..20239740 (25 bp)
ATAACCTGTGGTCGAGTCTTGTATA
LOC_Os09g34280
Os.9097.1.A1_at--18--531Chr09:20239742..20239766 (25 bp)
ATCGAAGCCCGTTTGCCTGATGAAA
LOC_Os09g34280
Os.9097.1.A1_at--807--671Chr09:20239761..20239785 (25 bp)
ATGAAACTCCATGGCATTCAGCGGA
LOC_Os09g34280
Os.9097.1.A1_at--109--5151Chr09:20239832..20239856 (25 bp)
GCAACTGAAGCCTCCTTTTGTGTAG
LOC_Os09g34280
Os.9097.1.A1_at--421--5391Chr09:20239916..20239940 (25 bp)
GAAGCAGCCACTTTTTTGTAGGCAT
LOC_Os09g34280
Os.9097.1.A1_at--967--8731Chr09:20239965..20239989 (25 bp)
TGTACTCTTAATGCTCACCAATGTG
LOC_Os09g34280
Target Sequence 
TGTACAATGGCAATCGGCACCGCGATCATGCTGGCCACCCTTGGGTCCATGTGCTACTGCATTATCGCTCACAGGATGGA
GGAGAAGAACATGAAGAAGATCAGGAGGTCATCCACCAGCCAGTCGTGGTCCATATCAGTCGATTCGGATACAGAGCTAC
TGAACAACGAATACAAGAAGATCTATGCACTTTAGGATAACAATATAACCTGTGGTCGAGTCTTGTATATATCGAAGCCC
GTTTGCCTGATGAAACTCCATGGCATTCAGCGGAGTTTGACTCNCAAAGTATATTTAGGCCTAGAACATGGCAGCTTTGT
GCAACTGAAGCCTCCTTTTGTGTAGAGAAAGGAGGCCATCCATCCATCTCACTGCATTTGCTACTATATAGATTCCAGGT
GATACTTTGAAGCAGCCACTTTTTTGTAGGCATCATAGGAGTATTGGTAAAGCAGAATGTACTCTTAATGCTCACCAATG
TG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9097.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis