Browse Element(s) Details


OsAffx.28370.1.S1_x_at

Description tigr:9637.m02958
TID=OsAffx.28370.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=UDP-glucoronosyl and UDP-glucosyl transferase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3427011/11hypothetical protein
LOC_Os09g315104/11NAD dependent epimerase/dehydratase family protein
LOC_Os08g446603/11EF hand family protein, expressed
LOC_Os04g590302/11hypothetical protein
LOC_Os07g098801/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g34214OsAffx.32335.1.S1_x_at3/119+20196229..20203371UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os09g34214Os.26688.1.S3_s_at1/119+20196229..20203371UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os09g34230Os.10546.1.S1_s_at11/119+20213904..20215700UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os09g34230OsAffx.30138.1.S1_at11/119+20213904..20215700UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os09g34240OsAffx.17993.1.S1_at10/119+20218376..20219892hypothetical protein
LOC_Os09g34250Os.48216.1.S1_at11/119+20221695..20223511UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os09g34260OsAffx.10665.1.S1_x_at2/119+20223751..20224881hypothetical protein
LOC_Os09g34260Os.55138.1.S1_x_at2/119+20223751..20224881hypothetical protein
LOC_Os09g34260OsAffx.20707.2.S1_x_at1/119+20223751..20224881hypothetical protein
LOC_Os09g34260Os.55476.1.S1_at1/119+20223751..20224881hypothetical protein
LOC_Os09g34270OsAffx.28370.1.S1_x_at11/119+20228189..20233470hypothetical protein
LOC_Os09g34270OsAffx.28370.1.S1_at9/119+20228189..20233470hypothetical protein
LOC_Os09g34270OsAffx.20187.1.S1_at3/119+20228189..20233470hypothetical protein
LOC_Os09g34280Os.9097.1.A1_at11/119+20235938..20240135ankyrin repeat family protein, putative, expressed
LOC_Os09g34290OsAffx.30140.1.S1_at11/119+20241008..20242592hypothetical protein
LOC_Os09g34300Os.10518.1.S1_at11/119+20243173..20248047Inositol 1, 3, 4-trisphosphate 5/6-kinase family protein, expressed
LOC_Os09g34310NANA9+20251801..20254012expressed protein
LOC_Os09g34320Os.5209.2.S1_at10/119+20257935..20259483expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009408biological_processresponse to heat
GO:0009409biological_processresponse to cold
GO:0009612biological_processresponse to mechanical stimulus
GO:0009646biological_processresponse to absence of light
GO:0009733biological_processresponse to auxin stimulus
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009809biological_processlignin biosynthesis
GO:0010038biological_processresponse to metal ion
GO:0019722biological_processcalcium-mediated signaling
GO:0042542biological_processresponse to hydrogen peroxide
GO:0048574biological_processlong-day photoperiodism, flowering
GO:0005509molecular_functioncalcium ion binding
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016621molecular_functioncinnamoyl-CoA reductase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28370.1.S1_x_at--406--7854Chr09:20232938..20232962 (25 bp)
GGTACCAAAATCCTGGCCGTTGGAT
LOC_Os09g34270
OsAffx.28370.1.S1_x_at--111--8471Chr09:20232964..20232988 (25 bp)
TGGCCCGATCTAACGGCTGGTAGAG
LOC_Os09g34270
OsAffx.28370.1.S1_x_at--134--6976Chr09:20233003..20233027 (25 bp)
GTACCAATTCTGTCCCTGTGCAGTA
LOC_Os09g34270
OsAffx.28370.1.S1_x_at--368--7252Chr09:20233014..20233038 (25 bp)
GTCCCTGTGCAGTACCACGCGGAGA
LOC_Os09g34270
OsAffx.28370.1.S1_x_at--958--191Chr09:20233064..20233088 (25 bp)
ATTTCGCGTGCAATAACCGGATCGG
LOC_Os09g34270
OsAffx.28370.1.S1_x_at--907--8515Chr09:20233095..20233119 (25 bp)
TGGACGGGCAGCTCGAACCCTAGAA
LOC_Os09g34270
OsAffx.28370.1.S1_x_at--160--1811Chr09:20233111..20233135 (25 bp)
ACCCTAGAAGCGCTGGGATTCTTGA
LOC_Os09g34270
OsAffx.28370.1.S1_x_at--128--131Chr09:20233128..20233152 (25 bp)
ATTCTTGATCGATCGACGCCGCCGA
LOC_Os09g34270
OsAffx.28370.1.S1_x_at--850--5794Chr09:20233142..20233166 (25 bp)
GACGCCGCCGACTCTTGGAGGTGAA
LOC_Os09g34270
OsAffx.28370.1.S1_x_at--501--10676Chr09:20233156..20233180 (25 bp)
TTGGAGGTGAACTCAGCCGTCGCCG
LOC_Os09g34270
OsAffx.28370.1.S1_x_at--901--8171Chr09:20233226..20233250 (25 bp)
GGAACGACAAGTTCGCTGCTGCCGT
LOC_Os09g34270
Target Sequence 
GGTACCAAAATCCTGGCCGTTGGATCTGGCCCGATCTAACGGCTGGTAGAGTTTGGTACCGGGCGGTACCAATTCTGTCC
CTGTGCAGTACCACGCGGAGAACTGAGGTGGAAGGGCAAAAACGTAATTTCGCGTGCAATAACCGGATCGGGAGGGATGG
ACGGGCAGCTCGAACCCTAGAAGCGCTGGGATTCTTGATCGATCGACGCCGCCGACTCTTGGAGGTGAACTCAGCCGTCG
CCGCCGCCGCCTCCGGGAAGGACGACATCGACGCCGCCACCGTCGCCGGGAACGACAAGTTCGCTGCTGCCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28370.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis