Browse Element(s) Details


Os.51320.1.S1_x_at

Description gb:AK062524.1
DB_XREF= gi:32972542
TID=Os.51320.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51320 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-104-D08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-104-D08, full insert sequence.
FL= gb:AK062524.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1183011/11expressed protein
LOC_Os09g343405/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g11810NANA12+6409214..6413635retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g11820Os.45173.5.S1_x_at4/1112+6413899..6416255retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g11820Os.45173.1.S1_x_at3/1112+6413899..6416255retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g11820OsAffx.20877.1.S1_at1/1112+6413899..6416255retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g11830Os.51320.1.S1_x_at11/1112+6424600..6425310expressed protein
LOC_Os12g11830Os.52532.1.S1_x_at5/1112+6424600..6425310expressed protein
LOC_Os12g11830Os.54448.1.S1_x_at2/1112+6424600..6425310expressed protein
LOC_Os12g11830OsAffx.10196.1.S1_x_at1/1112+6424600..6425310expressed protein
LOC_Os12g11830Os.54448.1.S1_s_at1/1112+6424600..6425310expressed protein
LOC_Os12g11840OsAffx.19617.1.S1_at11/1112+6428437..6428682expressed protein
LOC_Os12g11850NANA12+6429041..6431431hypothetical protein
LOC_Os12g11860OsAffx.31705.1.S1_at1/1112+6446148..6449165Leucine Rich Repeat family protein
LOC_Os12g11860OsAffx.31705.2.S1_at1/1112+6446148..6449165Leucine Rich Repeat family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51320.1.S1_x_at--477--4672Chr03:36113760..36113784 (25 bp)
GCGGGAGAGCCACGGTTGGAGCAAA
NONE
Os.51320.1.S1_x_at--366--2311Chr12:6425145..6425169 (25 bp)
AAAGCGAGGCGGCAGACGGGCGACC
LOC_Os12g11830
Os.51320.1.S1_x_at--1146--1372Chr03:36113795..36113819 (25 bp)
AGACGGGCGACCGAGGCAGGTGGGC
NONE
Os.51320.1.S1_x_at--319--4692Chr12:6425040..6425064 (25 bp)
GCGGATCCTCCACCGGTGACTGGAT
LOC_Os12g11830
Os.51320.1.S1_x_at--646--7371Chr12:6425025..6425049 (25 bp)
GTGACTGGATCTCGTCCTCTCTCTG
LOC_Os12g11830
Os.51320.1.S1_x_at--383--9315Chr05:6716063..6716083 (21 bp)
TCCCTCCACTACTTCCGATGGGTGG
NONE
Os.51320.1.S1_x_at--956--2016Chr03:36114002..36114026 (25 bp)
ACTACTTCCGATGGGTGGATCCGGC
NONE
Os.51320.1.S1_x_at--1088--571Chr12:6424714..6424738 (25 bp)
ATCCAGCGGCAATGGCAGCGGCCGA
LOC_Os12g11830
Os.51320.1.S1_x_at--990--6832Chr12:6424653..6424677 (25 bp)
GTTTCTTTTTCGTGGAATCGGACAT
LOC_Os12g11830
Os.51320.1.S1_x_at--328--6753Chr12:6424619..6424643 (25 bp)
GTTCATGAGCTCTACTCGGATTAAA
LOC_Os12g11830
Os.51320.1.S1_x_at--965--4813Chr12:6424611..6424635 (25 bp)
GCTCTACTCGGATTAAAATTGCTCT
LOC_Os12g11830
Target Sequence 
GCGGGAGAGCCACGGTTGGAGCAAAGCGAGGCGGCAGACGGGCGACCGAGGCAGGTGGGCGGGGAGCGAACCGACGACTT
CTTCCCCTCCCACACGCATCCCATCATCTCCCTTGCTCCCCTCTTGCGCGGATCCTCCACCGGTGACTGGATCTCGTCCT
CTCTCTGGCCGCTAGCGGCGGCCGCGGCCTTCCCCACCGTGAGCGGCCACGGCGGCTCCCTCCACTACTTCCGATGGGTG
GATCCGGCGGTGGCGGTGGCAGTGGCGACGGCGGTGGCAGCGGCCGAGGGCGGATCCGGCGGCAGTCGGTGGTGGTGGTG
TCGGTGACAGCCGCCGCCTCTCTTCTGCCTTCGGTGGAGGTGGTGGCGTCGGGTGGATCCGGTGGCAGTGGCGGTGGCCG
AGGGCGATCCGGCGGCAGTCGGCGGTGGTGGCGTCAGCGACGGCCGCGGGTGGATCCAGCGGCAATGGCAGCGGCCGAGG
GCGGATCCGGTCGCCTTTTTTTTCGCCCGAGTTTGTTTCTTTTTCGTGGAATCGGACATTGGGATCAAGTTCATGAGCTC
TACTCGGATTAAAATTGCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51320.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis