Browse Element(s) Details


OsAffx.31705.1.S1_at

Description tigr:9640.m01094
TID=OsAffx.31705.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1151011/11Leucine Rich Repeat family protein
LOC_Os12g119403/11Leucine Rich Repeat family protein
LOC_Os12g118601/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g11490OsAffx.7556.1.S1_at11/1112+6202087..6205412hypothetical protein
LOC_Os12g11500NANA12+6223134..6226115Leucine Rich Repeat family protein, expressed
LOC_Os12g11510OsAffx.31705.1.S1_at11/1112+6230258..6234418Leucine Rich Repeat family protein
LOC_Os12g11510OsAffx.8678.1.S1_at8/1112+6230258..6234418Leucine Rich Repeat family protein
LOC_Os12g11520OsAffx.19620.2.S1_at11/1112+6236444..6236839hypothetical protein
LOC_Os12g11530OsAffx.10646.1.S1_x_at1/1112+6237493..6237729hypothetical protein
LOC_Os12g11550Os.56977.1.S1_at2/1112+6258504..6258713hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0007165biological_processsignal transduction
GO:0010200biological_processresponse to chitin
GO:0050832biological_processdefense response to fungi
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31705.1.S1_at--1090--7592Chr12:6448401..6448425 (25 bp)
GGGCAGATATTGGATCCTTCTTATA
LOC_Os12g11860
OsAffx.31705.1.S1_at--277--6371Chr12:6230689..6230713 (25 bp)
GATCCTTCTTATACTGGAGGTGGAA
LOC_Os12g11510
OsAffx.31705.1.S1_at--242--6511Chr12:6230632..6230656 (25 bp)
GATATGTCATCGAACAACCTCAGTG
LOC_Os12g11510
OsAffx.31705.1.S1_at--180--2211Chr12:6230528..6230552 (25 bp)
ACAACATCTGTATTACCGTGGCAAG
LOC_Os12g11510
OsAffx.31705.1.S1_at--410--8232Chr12:6517010..6517034 (25 bp)
GGCAAGATGCAGTCATACCAGTTCA
LOC_Os12g11940
OsAffx.31705.1.S1_at--921--1212Chr12:6516991..6517015 (25 bp)
AGTTCACTGCTGGAATCTCATACAA
LOC_Os12g11940
OsAffx.31705.1.S1_at--408--8411Chr12:6230458..6230482 (25 bp)
GGCCTGACGATTTCCAAGACCTTAA
LOC_Os12g11510
OsAffx.31705.1.S1_at--356--6271Chr12:6230416..6230440 (25 bp)
GATGTCTCAAATAACGCTTTCCATG
LOC_Os12g11510
OsAffx.31705.1.S1_at--836--1811Chr12:6230403..6230427 (25 bp)
ACGCTTTCCATGGTAGAATCCCTAG
LOC_Os12g11510
OsAffx.31705.1.S1_at--998--9471Chr12:6230338..6230362 (25 bp)
TCTCATAATGCTCTTACGGGTCCAA
LOC_Os12g11510
OsAffx.31705.1.S1_at--250--7272Chr12:6516820..6516844 (25 bp)
GTCCAATCCCAGTTCAGTTTGCTAA
LOC_Os12g11940
Target Sequence 
GGGCAGATATTGGATCCTTCTTATACTGGAGGTGGAAACAACTGTCAATTTACGAAACTGCAGTTTGCTGATATGTCATC
GAACAACCTCAGTGGCACATTGCCAGAAGAGTGGTTCAAGATGCTCAAATCAATGATAATGGACACGTGTGATAATGATA
TGTTAATGAGAGAACAACATCTGTATTACCGTGGCAAGATGCAGTCATACCAGTTCACTGCTGGAATCTCATACAAAGGT
AGTGGCCTGACGATTTCCAAGACCTTAAGAACACTTGTACTCATTGATGTCTCAAATAACGCTTTCCATGGTAGAATCCC
TAGAAGCATTGGGGAACTTGTGTTGCTTCGTGCTCTCAACATGTCTCATAATGCTCTTACGGGTCCAATCCCAGTTCAGT
TTGCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31705.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis