Browse Element(s) Details


OsAffx.10646.1.S1_x_at

Description gb:NM_183935.1
DB_XREF= gi:34894997
GEN=B1088D01.21
TID=OsAffx.10646.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1088D01.21 (B1088D01.21), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g115301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g11500NANA12+6223134..6226115Leucine Rich Repeat family protein, expressed
LOC_Os12g11510OsAffx.31705.1.S1_at11/1112+6230258..6234418Leucine Rich Repeat family protein
LOC_Os12g11510OsAffx.8678.1.S1_at8/1112+6230258..6234418Leucine Rich Repeat family protein
LOC_Os12g11520OsAffx.19620.2.S1_at11/1112+6236444..6236839hypothetical protein
LOC_Os12g11530OsAffx.10646.1.S1_x_at1/1112+6237493..6237729hypothetical protein
LOC_Os12g11550Os.56977.1.S1_at2/1112+6258504..6258713hypothetical protein
LOC_Os12g11560Os.47463.1.S1_x_at6/1112+6261277..6265909transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g11560Os.14491.2.S1_x_at4/1112+6261277..6265909transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10646.1.S1_x_at--117--3811Chr01:13396314..13396338 (25 bp)
CTGCCACCGGCCACCGGATGGTAGG
NONE
OsAffx.10646.1.S1_x_at--930--63710Chr12:6237673..6237692 (20 bp)
GATCCGATCTTATCTAAATATCTCG
LOC_Os12g11530
OsAffx.10646.1.S1_x_at--185--10414Chr10:10253561..10253585 (25 bp)
TTATCTAAATATCTCGGTGAGGAAG
NONE
OsAffx.10646.1.S1_x_at--777--6171Chr01:13396424..13396448 (25 bp)
GAGGAAGAAAATCTCGTCTTGGACT
NONE
OsAffx.10646.1.S1_x_at--877--5511Chr01:13396430..13396454 (25 bp)
GAAAATCTCGTCTTGGACTTAACCG
NONE
OsAffx.10646.1.S1_x_at--834--451Chr01:13396434..13396458 (25 bp)
ATCTCGTCTTGGACTTAACCGATCG
NONE
OsAffx.10646.1.S1_x_at--948--7131Chr01:13396439..13396463 (25 bp)
GTCTTGGACTTAACCGATCGGAGAT
NONE
OsAffx.10646.1.S1_x_at--73--9811Chr01:13396449..13396473 (25 bp)
TAACCGATCGGAGATGGGAGATAAA
NONE
OsAffx.10646.1.S1_x_at--581--25518Chr12:16314704..16314725 (22 bp)
AACTCCAACCAGGACTAAAGATGGA
NONE
OsAffx.10646.1.S1_x_at--478--9835Chr07:3790863..3790886 (24 bp)
TAAAGATGGATTTTTAGTTCTGGTT
NONE
OsAffx.10646.1.S1_x_at--458--8251Chr01:13396513..13396537 (25 bp)
TGGATTTTTAGTTCTGGTTAGTGTT
NONE
Target Sequence 
CTGCCACCGGCCACCGGATGGTAGGGGAGGAGGGAGGGGAGGAGGAGGAGGAAGGGGATCTGAAGGGTAGGAGGAGAGGG
GATGATCCGATCTTATCTAAATATCTCGGTGAGGAAGAAAATCTCGTCTTGGACTTAACCGATCGGAGATGGGAGATAAA
TATTTACTCCCGGTTGGTAACTCCAACCAGGACTAAAGATGGATTTTTAGTTCTGGTTAGTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10646.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis