Browse Element(s) Details


OsAffx.19620.2.S1_at

Description tigr:9640.m01095
TID=OsAffx.19620.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1152011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g11500NANA12+6223134..6226115Leucine Rich Repeat family protein, expressed
LOC_Os12g11510OsAffx.31705.1.S1_at11/1112+6230258..6234418Leucine Rich Repeat family protein
LOC_Os12g11510OsAffx.8678.1.S1_at8/1112+6230258..6234418Leucine Rich Repeat family protein
LOC_Os12g11520OsAffx.19620.2.S1_at11/1112+6236444..6236839hypothetical protein
LOC_Os12g11530OsAffx.10646.1.S1_x_at1/1112+6237493..6237729hypothetical protein
LOC_Os12g11550Os.56977.1.S1_at2/1112+6258504..6258713hypothetical protein
LOC_Os12g11560Os.47463.1.S1_x_at6/1112+6261277..6265909transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g11560Os.14491.2.S1_x_at4/1112+6261277..6265909transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19620.2.S1_at--939--9171Chr12:6236576..6236600 (25 bp)
TGCCGTTGCCACCATAGACTAGCGT
LOC_Os12g11520
OsAffx.19620.2.S1_at--154--6691Chr12:6236580..6236604 (25 bp)
GTTGCCACCATAGACTAGCGTCGAA
LOC_Os12g11520
OsAffx.19620.2.S1_at--724--291Chr12:6236589..6236613 (25 bp)
ATAGACTAGCGTCGAAGCGTAGCAA
LOC_Os12g11520
OsAffx.19620.2.S1_at--903--2011Chr12:6236593..6236617 (25 bp)
ACTAGCGTCGAAGCGTAGCAAGAGG
LOC_Os12g11520
OsAffx.19620.2.S1_at--467--4231Chr12:6236645..6236669 (25 bp)
CCGAGTGACATGACCTTATGTGCGC
LOC_Os12g11520
OsAffx.19620.2.S1_at--483--7371Chr12:6236649..6236673 (25 bp)
GTGACATGACCTTATGTGCGCAGCA
LOC_Os12g11520
OsAffx.19620.2.S1_at--117--5671Chr12:6236651..6236675 (25 bp)
GACATGACCTTATGTGCGCAGCACA
LOC_Os12g11520
OsAffx.19620.2.S1_at--590--691Chr12:6236654..6236678 (25 bp)
ATGACCTTATGTGCGCAGCACAATT
LOC_Os12g11520
OsAffx.19620.2.S1_at--865--7291Chr12:6236664..6236688 (25 bp)
GTGCGCAGCACAATTTGATGCGCAA
LOC_Os12g11520
OsAffx.19620.2.S1_at--140--7911Chr12:6236694..6236718 (25 bp)
GGTTGGTGCCTGAGAAGGGTCATGT
LOC_Os12g11520
OsAffx.19620.2.S1_at--1065--4271Chr12:6236702..6236726 (25 bp)
CCTGAGAAGGGTCATGTGTTGGCCG
LOC_Os12g11520
Target Sequence 
TGCCGTTGCCACCATAGACTAGCGTCGAAGCGTAGCAAGAGGATTGCGGCCAAGCTTGCGCTCGCCGGCCCGAGTGACAT
GACCTTATGTGCGCAGCACAATTTGATGCGCAAGCTTGGGTTGGTGCCTGAGAAGGGTCATGTGTTGGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19620.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis