Browse Element(s) Details


OsAffx.30135.1.S1_at

Description tigr:9637.m02946
TID=OsAffx.30135.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=resistance protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3416011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g34120OsAffx.30134.1.S1_at11/119+20145330..20145839expressed protein
LOC_Os09g34130Os.20730.1.S1_at11/119+20146717..20153743C2 domain-containing protein, putative, expressed
LOC_Os09g34140Os.8469.1.S1_at11/119+20155974..20157770expressed protein
LOC_Os09g34150Os.49413.1.A1_x_at11/119+20157225..20161527NB-ARC domain containing protein, expressed
LOC_Os09g34160OsAffx.30135.1.S1_at11/119+20162189..20167295NB-ARC domain containing protein, expressed
LOC_Os09g34170NANA9+20171841..20172152hypothetical protein
LOC_Os09g34180Os.6745.1.S1_at11/119+20179233..20182541FH protein NFH2, putative, expressed
LOC_Os09g34190Os.9110.1.S1_at11/119+20182857..20185813thioesterase family protein, expressed
LOC_Os09g34200Os.50484.1.S1_at11/119+20186675..20191104F-box domain containing protein
LOC_Os09g34200OsAffx.30137.1.S1_at10/119+20186675..20191104F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30135.1.S1_at--119--6551Chr09:20163152..20163176 (25 bp)
GATTCCCTAAAGTTTCTTGCTGAAA
LOC_Os09g34160
OsAffx.30135.1.S1_at--1031--3151Chr09:20163124..20163148 (25 bp)
AATTCGCAGCACCAAAACATCTTCT
LOC_Os09g34160
OsAffx.30135.1.S1_at--1021--2391Chr09:20163110..20163134 (25 bp)
AAACATCTTCTTTCACTTAGGCTAT
LOC_Os09g34160
OsAffx.30135.1.S1_at--1143--10851Chr09:20163055..20163079 (25 bp)
TTGGTTCACTCAATGATCTGGCGAA
LOC_Os09g34160
OsAffx.30135.1.S1_at--197--8051Chr09:20162999..20163023 (25 bp)
GGAGAAATCATGCACCTCGGGAAGC
LOC_Os09g34160
OsAffx.30135.1.S1_at--725--2631Chr09:20162969..20162993 (25 bp)
AACCTAGCATTTCTCGGCTTGTGGG
LOC_Os09g34160
OsAffx.30135.1.S1_at--263--9691Chr09:20162924..20162948 (25 bp)
TCACTGCATTTTGGTCCTGGCACAT
LOC_Os09g34160
OsAffx.30135.1.S1_at--256--8471Chr09:20162835..20162859 (25 bp)
TGGCGCGATGCCTGAGCTTGAACAA
LOC_Os09g34160
OsAffx.30135.1.S1_at--55--2451Chr09:20162815..20162839 (25 bp)
AACAACTCTGGGTGAACGACTGCAA
LOC_Os09g34160
OsAffx.30135.1.S1_at--727--8031Chr09:20162759..20162783 (25 bp)
GGAGTACCACATCTGACAAACCTGA
LOC_Os09g34160
OsAffx.30135.1.S1_at--985--9731Chr09:20162660..20162682 (23 bp)
TAAACGCCCGAAGTTCCTCATTGAA
LOC_Os09g34160
Target Sequence 
GATTCCCTAAAGTTTCTTGCTGAAAGTGAATTCGCAGCACCAAAACATCTTCTTTCACTTAGGCTATATGGCAATCTAGT
CAGGTTGCCTAAATGGATTGGTTCACTCAATGATCTGGCGAAGCTGAAGCTGCTGGGGACACAATTGAAGCAGGGAGAAA
TCATGCACCTCGGGAAGCTGCGCAACCTAGCATTTCTCGGCTTGTGGGACAACTCTTATGTAGGGTATTCACTGCATTTT
GGTCCTGGCACATTCCCAAAACTCAAGTTCCTTGACATTGATGGGCTGAAGAACATTGAAACGGTGGCGATCGAGAATGG
CGCGATGCCTGAGCTTGAACAACTCTGGGTGAACGACTGCAAAGGACTACTTGATAGCAAAGATGGTTTATCAGGAGTAC
CACATCTGACAAACCTGAATGAGCTTCTTGTGAAGAAGTGTGGTGAGAAGGAGAACCTGATGGAGATACTGCAAACACAG
GTCAGCGAACACAGTAAACGCCCGAAGTTCCTCATTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30135.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis