CREP Browser

Os.14885.1.S1_at

Description

gb:BI810491
DB_XREF= gi:15857679
DB_XREF=J009F03
CLONE=J009F03
TID=Os.14885.1
CNT=5
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.14885 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_178129.1 (A.thaliana) hypothetical protein (Arabidopsis thaliana)
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os05g43460	9/11	expressed protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os05g43410	NA	NA	5	+	25156077..25162231	retrotransposon protein, putative, unclassified
LOC_Os05g43420	NA	NA	5	+	25162852..25166143	retrotransposon protein, putative, unclassified
LOC_Os05g43440	Os.22455.1.A1_at	9/11	5	+	25171607..25176541	Single-strand binding protein family protein, expressed
LOC_Os05g43450	Os.53504.1.S1_at	11/11	5	+	25177479..25180516	Transcription initiation factor IIF, beta subunit family protein, expressed
LOC_Os05g43460	Os.14885.1.S1_at	9/11	5	+	25183001..25184001	expressed protein
LOC_Os05g43470	Os.5176.1.S1_at	10/11	5	+	25184696..25189013	chloroplast outer membrane protein, putative, expressed
LOC_Os05g43480	Os.10062.1.S1_at	10/11	5	+	25191183..25196932	Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os05g43490	Os.18454.2.S1_a_at	11/11	5	+	25199902..25203459	F-box family protein, putative, expressed
LOC_Os05g43510	OsAffx.15086.1.S1_at	11/11	5	+	25208048..25209745	Pyridoxal-dependent decarboxylase conserved domain containing protein, expressed

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.14885.1.S1_at--726--121	1	NONE	AGTTCGCCGGTGTAAAAGCTTGCGG	NONE
Os.14885.1.S1_at--123--243	1	NONE	AAAAGCTTGCGGTGATCGGATCAAT	NONE
Os.14885.1.S1_at--85--641	1	Chr05:25183828..25183852 (25 bp)	GATCGGATCAATGGGTTCATGCTTA	LOC_Os05g43460
Os.14885.1.S1_at--986--795	1	Chr05:25183832..25183856 (25 bp)	GGATCAATGGGTTCATGCTTAGAGA	LOC_Os05g43460
Os.14885.1.S1_at--1074--767	1	Chr05:25183840..25183864 (25 bp)	GGGTTCATGCTTAGAGATGTGTAAA	LOC_Os05g43460
Os.14885.1.S1_at--318--1055	1	Chr05:25183884..25183908 (25 bp)	TTCTTTTTTGTATGTTTTCTTGTCG	LOC_Os05g43460
Os.14885.1.S1_at--1091--691	1	Chr05:25183893..25183917 (25 bp)	GTATGTTTTCTTGTCGAAGTTTGAA	LOC_Os05g43460
Os.14885.1.S1_at--1083--223	1	Chr05:25183932..25183955 (24 bp)	AAATTGAGCTTGTAGCTTTGAGCGA	LOC_Os05g43460
Os.14885.1.S1_at--309--593	1	Chr05:25183936..25183960 (25 bp)	GAGCTTGTAGCTTTGAGCGAAATGC	LOC_Os05g43460
Os.14885.1.S1_at--27--589	1	Chr05:25183950..25183974 (25 bp)	GAGCGAAATGCAAGTTACTCCTAAT	LOC_Os05g43460
Os.14885.1.S1_at--797--63	1	Chr05:25183957..25183981 (25 bp)	ATGCAAGTTACTCCTAATTACGTTA	LOC_Os05g43460

Target Sequence

AGTTCGCCGGTGTAAAAGCTTGCGGTGATCGGATCAATGGGTTCATGCTTAGAGATGTGTAAAATATGTATCATCTTGCA
AATTCTTTTTTGTATGTTTTCTTGTCGAAGTTTGAATATTTTGCCNTTGTAAATTGAGCTTGTAGCTTTGAGCGAAATGC
AAGTTACTCCTAATTACGTTA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis

Browse Element(s) Details