Browse Element(s) Details


OsAffx.15086.1.S1_at

Description tigr:9633.m04048
TID=OsAffx.15086.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Pyridoxal-dependent decarboxylase conserved domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4351011/11Pyridoxal-dependent decarboxylase conserved domain containing protein, expressed
LOC_Os10g239001/11Pyridoxal-dependent decarboxylase conserved domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g43460Os.14885.1.S1_at9/115+25183001..25184001expressed protein
LOC_Os05g43470Os.5176.1.S1_at10/115+25184696..25189013chloroplast outer membrane protein, putative, expressed
LOC_Os05g43480Os.10062.1.S1_at10/115+25191183..25196932Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os05g43490Os.18454.2.S1_a_at11/115+25199902..25203459F-box family protein, putative, expressed
LOC_Os05g43510OsAffx.15086.1.S1_at11/115+25208048..25209745Pyridoxal-dependent decarboxylase conserved domain containing protein, expressed
LOC_Os05g43520Os.34745.1.A1_at11/115+25212558..25215866BSD domain containing protein, expressed
LOC_Os05g43530OsAffx.20285.2.S1_at11/115+25217581..25221292glycosyl transferase family 2 protein, putative, expressed
LOC_Os05g43530Os.15705.1.S1_x_at11/115+25217581..25221292glycosyl transferase family 2 protein, putative, expressed
LOC_Os05g43530OsAffx.20285.1.S1_x_at1/115+25217581..25221292glycosyl transferase family 2 protein, putative, expressed
LOC_Os05g43540Os.10504.1.S1_at11/115+25229534..25233108expressed protein
LOC_Os05g43550OsAffx.27292.1.S1_at11/115+25233838..25235136Eukaryotic aspartyl protease family protein

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Gene Ontology Classification
GO idTypeName
GO:0006520biological_processamino acid metabolism
GO:0004837molecular_functiontyrosine decarboxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15086.1.S1_at--217--1832Chr10:11929707..11929767 (25 bp)
ACGCCGCGGTGGACTACAAGGACTG
LOC_Os10g23900
OsAffx.15086.1.S1_at--645--9851Chr05:25208593..25208617 (25 bp)
TACAAGGACTGGCAGGTCGCGCTGA
LOC_Os05g43510
OsAffx.15086.1.S1_at--184--9391Chr05:25208436..25208460 (25 bp)
TCGAGGTGCCCGTCCCGAGGCAGTT
LOC_Os05g43510
OsAffx.15086.1.S1_at--1092--10631Chr05:25208413..25208437 (25 bp)
TTCGCGCTGGTCTGCTTCCGGCTGC
LOC_Os05g43510
OsAffx.15086.1.S1_at--1007--4991Chr05:25208259..25208283 (25 bp)
GCATGTACGTGCTGCGCTGCGCCGT
LOC_Os05g43510
OsAffx.15086.1.S1_at--855--1691Chr05:25208211..25208235 (25 bp)
ACCACGTCCGGGAGGCGTGGAGCGT
LOC_Os05g43510
OsAffx.15086.1.S1_at--222--4131Chr05:25208141..25208165 (25 bp)
CGCTGACACTGCTCGTACCAAGGAC
LOC_Os05g43510
OsAffx.15086.1.S1_at--736--5631Chr05:25208137..25208161 (25 bp)
GACACTGCTCGTACCAAGGACCACG
LOC_Os05g43510
OsAffx.15086.1.S1_at--310--1871Chr05:25208103..25208127 (25 bp)
ACGACCATGGCGCAGATCAGCCGCA
LOC_Os05g43510
OsAffx.15086.1.S1_at--651--871Chr05:25208097..25208121 (25 bp)
ATGGCGCAGATCAGCCGCACGCGAT
LOC_Os05g43510
OsAffx.15086.1.S1_at--938--5031Chr05:25208092..25208116 (25 bp)
GCAGATCAGCCGCACGCGATGACGA
LOC_Os05g43510
Target Sequence 
ACGCCGCGGTGGACTACAAGGACTGGCAGGTCGCGCTGAGCCGCCGGTTCCGCGCGCTGAAGCTGTGGCTCGTCCTCCGC
TGCCACGGAGTCGACGGCTTGCGCGCCGTCGTGCGCTCCCACGTCCGCATGGCGGCCGCGCTCAAGCGCATGGTGCGCGC
CGACGCGCGGTTCGAGGTGCCCGTCCCGAGGCAGTTCGCGCTGGTCTGCTTCCGGCTGCGCGGCGGCGGCGCCGCCGCAC
AGCTCGTCGGCGGCGACGAGCTCACGGCCAGCAACGAGCTCAACAGGAGGCTCCTCGAGGCGGTGAACGCGACGGGGCGC
GCGTACATGAGCTCCGCCGTGGTGGGCGGCATGTACGTGCTGCGCTGCGCCGTCGGCAACTCGCTCACCGAGGAGCACCA
CGTCCGGGAGGCGTGGAGCGTCGTGCAGGGGCAGGCCGCCGCCGTCTTGGCCACCGCCGGCGCCGCCGCTGACACTGCTC
GTACCAAGGACCACGCCGCCGGCGACGACCATGGCGCAGATCAGCCGCACGCGATGACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15086.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis