Browse Element(s) Details


Os.15705.1.S1_x_at

Description gb:BI812378
DB_XREF= gi:16578283
DB_XREF=E003D02
CLONE=E003D02
TID=Os.15705.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.15705 (NCBI UniGene Cluster)
UG_TITLE=CSLC7 mRNA, partial cds
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4353011/11glycosyl transferase family 2 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g43480Os.10062.1.S1_at10/115+25191183..25196932Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os05g43490Os.18454.2.S1_a_at11/115+25199902..25203459F-box family protein, putative, expressed
LOC_Os05g43510OsAffx.15086.1.S1_at11/115+25208048..25209745Pyridoxal-dependent decarboxylase conserved domain containing protein, expressed
LOC_Os05g43520Os.34745.1.A1_at11/115+25212558..25215866BSD domain containing protein, expressed
LOC_Os05g43530OsAffx.20285.2.S1_at11/115+25217581..25221292glycosyl transferase family 2 protein, putative, expressed
LOC_Os05g43530Os.15705.1.S1_x_at11/115+25217581..25221292glycosyl transferase family 2 protein, putative, expressed
LOC_Os05g43530OsAffx.20285.1.S1_x_at1/115+25217581..25221292glycosyl transferase family 2 protein, putative, expressed
LOC_Os05g43540Os.10504.1.S1_at11/115+25229534..25233108expressed protein
LOC_Os05g43550OsAffx.27292.1.S1_at11/115+25233838..25235136Eukaryotic aspartyl protease family protein
LOC_Os05g43560Os.17049.1.S1_at11/115+25238156..25247656expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016759molecular_functioncellulose synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15705.1.S1_x_at--422--2931Chr05:25218079..25218103 (25 bp)
AAGGAACTGGCACTTTCCTTCCTCT
LOC_Os05g43530
Os.15705.1.S1_x_at--900--10711Chr05:25218031..25218055 (25 bp)
TTGCTATCTGCTCAGGGAATCCATT
LOC_Os05g43530
Os.15705.1.S1_x_at--944--3031Chr05:25218014..25218038 (25 bp)
AATCCATTTCTACTTTCTTCTGTTC
LOC_Os05g43530
Os.15705.1.S1_x_at--379--9571Chr05:25217980..25218004 (25 bp)
TCATTCTTGGTTGTTGGTCTCGACC
LOC_Os05g43530
Os.15705.1.S1_x_at--327--6611Chr05:25217968..25217992 (25 bp)
GTTGGTCTCGACCTAATTGGTGAGC
LOC_Os05g43530
Os.15705.1.S1_x_at--641--7651Chr05:25217729..25217753 (25 bp)
GGGATGCTTTTATTCCTTCAGGCAA
LOC_Os05g43530
Os.15705.1.S1_x_at--506--91Chr05:25217718..25217742 (25 bp)
ATTCCTTCAGGCAATTCTTTTGTAA
LOC_Os05g43530
Os.15705.1.S1_x_at--922--9551Chr05:25217690..25217714 (25 bp)
TCTTTTGTGCCTAGATGGGTTCTTC
LOC_Os05g43530
Os.15705.1.S1_x_at--188--10551Chr05:25217671..25217695 (25 bp)
TTCTTCTTCTCTCTTAACAAACTTT
LOC_Os05g43530
Os.15705.1.S1_x_at--918--6831Chr05:25217623..25217647 (25 bp)
GTTTCTACCATGTACTTTGATCGAT
LOC_Os05g43530
Os.15705.1.S1_x_at--898--2031Chr05:25217610..25217634 (25 bp)
ACTTTGATCGATTACCTTGGGTATC
LOC_Os05g43530
Target Sequence 
AAGGAACTGGCACTTTCCTTCCTCTTGTTAACGNCANCAGCTCNCANNTTGCTATCTGCTCAGGGAATCCATTTCTACTT
TCTTCTGTTCCAAGGGGTCTCATTCTTGGTTGTTGGTCTCGACCTAATTGGTGAGCANAGTGGAGTGATAGAAGATGAAG
AGTTTAATGGGGTTCTTTTTTGTTTGAAAGAAAACACNTTTGCANAGCATCAANGGGCTCTTTGTAAAGGGAAGAGTGAT
GCAANTGTTCGATGCTTACACATGGAAGNTTTGATCCCTATTCTAGGGGTCANGATTCATCACATATACTGAACTGTGGA
GATGTAGATAGATATAGTTTGGATTAAGCCTGTGGGATGCTTTTATTCCTTCAGGCAATTCTTTTGTAAGAATCTTTTGT
GCCTAGATGGGTTCTTCTTCTCTCTTAACAAACTTTACCTTCAAATGAAGATAATACATGTTTCTACCATGTACTTTGAT
CGATTACCTTGGGTATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15705.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis