Browse Element(s) Details


Os.17049.1.S1_at

Description gb:AK070791.1
DB_XREF= gi:32980814
TID=Os.17049.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17049 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023064E24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023064E24, full insert sequence.
FL= gb:AK070791.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4356011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g43520Os.34745.1.A1_at11/115+25212558..25215866BSD domain containing protein, expressed
LOC_Os05g43530OsAffx.20285.2.S1_at11/115+25217581..25221292glycosyl transferase family 2 protein, putative, expressed
LOC_Os05g43530Os.15705.1.S1_x_at11/115+25217581..25221292glycosyl transferase family 2 protein, putative, expressed
LOC_Os05g43530OsAffx.20285.1.S1_x_at1/115+25217581..25221292glycosyl transferase family 2 protein, putative, expressed
LOC_Os05g43540Os.10504.1.S1_at11/115+25229534..25233108expressed protein
LOC_Os05g43550OsAffx.27292.1.S1_at11/115+25233838..25235136Eukaryotic aspartyl protease family protein
LOC_Os05g43560Os.17049.1.S1_at11/115+25238156..25247656expressed protein
LOC_Os05g43570Os.21326.1.S1_at11/115+25248678..25256568Protein kinase domain containing protein, expressed
LOC_Os05g43576Os.7615.1.S1_at10/115+25260594..25263053Lipoic acid synthetase, mitochondrial precursor, putative, expressed
LOC_Os05g43582OsAffx.4606.1.S1_x_at11/115+25263615..25266095rRNA methylase family protein, expressed
LOC_Os05g43590OsAffx.15087.1.S1_at11/115+25267428..25268366Serpin family protein
LOC_Os05g43600OsAffx.27293.1.S1_at11/115+25272116..25272558hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17049.1.S1_at--224--10631Chr05:25239763..25239787 (25 bp)
TTCGCTGACTCCTATGGACCAGATG
LOC_Os05g43560
Os.17049.1.S1_at--481--2991Chr05:25238588..25238607 (20 bp)
AATGATGCAGAATCGGTACCGCGCA
LOC_Os05g43560
Os.17049.1.S1_at--213--6991Chr05:25238573..25238597 (25 bp)
GTACCGCGCAGCATTTTGGACGATG
LOC_Os05g43560
Os.17049.1.S1_at--247--9911Chr05:25238498..25238522 (25 bp)
TACTCTGTTTGGAACGGTTGGCACA
LOC_Os05g43560
Os.17049.1.S1_at--677--7911Chr05:25238483..25238507 (25 bp)
GGTTGGCACAGGCTTACTGGCTATA
LOC_Os05g43560
Os.17049.1.S1_at--842--7131Chr05:25238446..25238470 (25 bp)
GTCATTCTATGGTGATGCCTATCAG
LOC_Os05g43560
Os.17049.1.S1_at--925--311Chr05:25238406..25238430 (25 bp)
ATACGGATGATCCAATTCACGCCAC
LOC_Os05g43560
Os.17049.1.S1_at--1142--1811Chr05:25238388..25238412 (25 bp)
ACGCCACCATTTTTCACCATGATAT
LOC_Os05g43560
Os.17049.1.S1_at--286--1131Chr05:25238341..25238365 (25 bp)
AGTGCATGCGTTCCATTACTGCGAT
LOC_Os05g43560
Os.17049.1.S1_at--640--9111Chr05:25238322..25238346 (25 bp)
TGCGATAAAACCAATCTCCGTCTGC
LOC_Os05g43560
Os.17049.1.S1_at--439--1971Chr05:25238270..25238294 (25 bp)
ACTGTTCCAGTTCGATGTATATCAA
LOC_Os05g43560
Target Sequence 
TTCGCTGACTCCTATGGACCAGATGATGATATGTCTATTGAACTGAGTTTGGAAGATGTGAAAAGAGTTGCTTACCATTA
TGGATTTGTGATGGAGGTGGAGAAAATGATAGATACCACATACACTGCAAATATGAAATCAATGATGCAGAATCGGTACC
GCGCAGCATTTTGGACGATGAGGAAGAATGCATCTCGATCAAAAGCTCAAAAACACCAGTGAGGTGGAGATACTCTGTTT
GGAACGGTTGGCACAGGCTTACTGGCTATAGATCAAATTTCAGTCATTCTATGGTGATGCCTATCAGATTTGGAGACGGA
CAATACGGATGATCCAATTCACGCCACCATTTTTCACCATGATATGAAACTATATGGATAGATTGATAGTGCATGCGTTC
CATTACTGCGATAAAACCAATCTCCGTCTGCCAAAACATTTGAATGGCACAGGGAAAAACTGTTCCAGTTCGATGTATAT
CAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17049.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis