Browse Element(s) Details


OsAffx.27293.1.S1_at

Description tigr:9633.m04057
TID=OsAffx.27293.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4360011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g43560Os.17049.1.S1_at11/115+25238156..25247656expressed protein
LOC_Os05g43570Os.21326.1.S1_at11/115+25248678..25256568Protein kinase domain containing protein, expressed
LOC_Os05g43576Os.7615.1.S1_at10/115+25260594..25263053Lipoic acid synthetase, mitochondrial precursor, putative, expressed
LOC_Os05g43582OsAffx.4606.1.S1_x_at11/115+25263615..25266095rRNA methylase family protein, expressed
LOC_Os05g43590OsAffx.15087.1.S1_at11/115+25267428..25268366Serpin family protein
LOC_Os05g43600OsAffx.27293.1.S1_at11/115+25272116..25272558hypothetical protein
LOC_Os05g43610Os.54191.1.S1_at11/115+25274047..25279555BRCA1 C Terminus domain containing protein, expressed
LOC_Os05g43619NANA5+25283734..25284146NA
LOC_Os05g43630Os.52238.1.S1_at6/115+25285221..25286730transposon protein, putative, Pong sub-class
LOC_Os05g43630OsAffx.8898.1.S1_at1/115+25285221..25286730transposon protein, putative, Pong sub-class
LOC_Os05g43640NANA5+25293730..25296862expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27293.1.S1_at--826--9411Chr05:25272434..25272458 (25 bp)
TCGTCCCTCTATCTGAGCAGCAACT
LOC_Os05g43600
OsAffx.27293.1.S1_at--928--9311Chr05:25272437..25272461 (25 bp)
TCCCTCTATCTGAGCAGCAACTGGT
LOC_Os05g43600
OsAffx.27293.1.S1_at--871--471Chr05:25272444..25272468 (25 bp)
ATCTGAGCAGCAACTGGTGGACTAC
LOC_Os05g43600
OsAffx.27293.1.S1_at--921--1511Chr05:25272449..25272473 (25 bp)
AGCAGCAACTGGTGGACTACGCCGA
LOC_Os05g43600
OsAffx.27293.1.S1_at--1052--1471Chr05:25272452..25272476 (25 bp)
AGCAACTGGTGGACTACGCCGACAT
LOC_Os05g43600
OsAffx.27293.1.S1_at--151--5671Chr05:25272472..25272496 (25 bp)
GACATCGCCTTGAACCACACATCTA
LOC_Os05g43600
OsAffx.27293.1.S1_at--178--9331Chr05:25272476..25272500 (25 bp)
TCGCCTTGAACCACACATCTAGGAG
LOC_Os05g43600
OsAffx.27293.1.S1_at--640--10751Chr05:25272481..25272505 (25 bp)
TTGAACCACACATCTAGGAGGGCAT
LOC_Os05g43600
OsAffx.27293.1.S1_at--274--5431Chr05:25272483..25272507 (25 bp)
GAACCACACATCTAGGAGGGCATTG
LOC_Os05g43600
OsAffx.27293.1.S1_at--419--3311Chr05:25272487..25272511 (25 bp)
CACACATCTAGGAGGGCATTGGAGT
LOC_Os05g43600
OsAffx.27293.1.S1_at--217--31Chr05:25272504..25272528 (25 bp)
ATTGGAGTGGATTGCCGAGAATGAC
LOC_Os05g43600
Target Sequence 
TCGTCCCTCTATCTGAGCAGCAACTGGTGGACTACGCCGACATCGCCTTGAACCACACATCTAGGAGGGCATTGGAGTGG
ATTGCCGAGAATGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27293.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis