Browse Element(s) Details


Os.14938.1.S1_at

Description gb:AK064690.1
DB_XREF= gi:32974708
TID=Os.14938.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.14938 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-116-E07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-116-E07, full insert sequence.
FL= gb:AK064690.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0114011/11SAM dependent carboxyl methyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g01090Os.14176.1.S1_at11/115+69722..73833Peroxisomal membrane anchor protein conserved region containing protein, expressed
LOC_Os05g01100OsAffx.4219.1.S1_at11/115+74141..74878expressed protein
LOC_Os05g01110Os.2476.1.S1_at11/115+75419..7784450S ribosomal protein L28, chloroplast precursor, putative, expressed
LOC_Os05g01110OsAffx.4220.1.S1_at11/115+75419..7784450S ribosomal protein L28, chloroplast precursor, putative, expressed
LOC_Os05g01120Os.53958.1.S1_at11/115+79445..82191Cytochrome P450 family protein, expressed
LOC_Os05g01130OsAffx.19542.3.S1_x_at7/115+83315..87536retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g01140Os.14938.1.S1_at11/115+94475..96310SAM dependent carboxyl methyltransferase family protein, expressed
LOC_Os05g01150OsAffx.18122.1.S1_x_at1/115+107645..110905transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g01160NANA5+112308..113183retrotransposon protein, putative, LINE subclass
LOC_Os05g01170NANA5+115204..118540retrotransposon protein, putative, unclassified, expressed
LOC_Os05g01180Os.53081.1.S1_at11/115+118825..121172Zinc knuckle family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008757molecular_functionS-adenosylmethionine-dependent methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14938.1.S1_at--449--4371Chr05:95051..95075 (25 bp)
CCACATTCCCTACAGTATCAGTATG
LOC_Os05g01140
Os.14938.1.S1_at--644--8751Chr05:95020..95044 (25 bp)
TGTATTTCCAAAACGTACCTACAAT
LOC_Os05g01140
Os.14938.1.S1_at--951--4031Chr05:94974..94998 (25 bp)
CGATATATATATACTACCCGGATAA
LOC_Os05g01140
Os.14938.1.S1_at--835--6431Chr05:94946..94970 (25 bp)
GATAGTATCGTTTCTAAAATCGGGA
LOC_Os05g01140
Os.14938.1.S1_at--902--2251Chr05:94930..94954 (25 bp)
AAATCGGGATACCAACTGTTTCATG
LOC_Os05g01140
Os.14938.1.S1_at--170--1711Chr05:94920..94944 (25 bp)
ACCAACTGTTTCATGTACTAGACAA
LOC_Os05g01140
Os.14938.1.S1_at--1109--5611Chr05:94799..94823 (25 bp)
GACAAATGTCTCTTTTCATGTACTA
LOC_Os05g01140
Os.14938.1.S1_at--136--1171Chr05:94635..94659 (25 bp)
AGTACAACTTCCATTCTAGCAGTAT
LOC_Os05g01140
Os.14938.1.S1_at--398--6891Chr05:94580..94604 (25 bp)
GTATAGTACAACTTCTCTTCTAGAT
LOC_Os05g01140
Os.14938.1.S1_at--140--9532Chr05:104173..104197 (25 bp)
TCTCTTCTAGATGTGATCCTCCTAT
NONE
Os.14938.1.S1_at--251--292Chr05:104245..104269 (25 bp)
ATAAATCTGTTGTGACTGGAATGGA
NONE
Target Sequence 
CCACATTCCCTACAGTATCAGTATGTATTACTGTATTTCCAAAACGTACCTACAATATATACCACNTGTCAGTTCTACGA
TATATATATACTACCCGGATAAAATGATAGTATCGTTTCTAAAATCGGGATACCAACTGTTTCATGTACTAGACAATATT
TAAATTCAAAACTATTTAAGTGTATTTGTGTTTATGTATCTTCAAAATCNATCTTAAATAAAATTATTAGAANTAGTGAG
TGGCTTTCTCTNGACAAATGTCTCTTTTCATGTACTATTCTATTTATTTAGAATGGCTATATATATTTAATATAAATATT
AAATTAAACTTANAAAAATAAAATATTATATATCCCGATNNTANGATGCGATTAAACNATCCGATACTACTCACCTTNTA
CATGTTCAAAGTGTATAGTACAACTTCCATTCTAGCAGTATATTATATANTAGTATATATCTGTTCAAAGTGTATAGTAC
AACTTCTCTTCTAGATGTGATCCTCCTATNTTATTATAAATATGTTTTTATTGTGTTTGTGTTGTAATTAACATATATAA
ATCTGTTGTGACTGGAATGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14938.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis