Browse Element(s) Details


Os.15139.1.S1_at

Description gb:AK105371.1
DB_XREF= gi:32990580
TID=Os.15139.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.15139 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative omega-6 fatty acid desaturase (OSJNBa0066B06.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-120-C08, full insert sequence.
FL= gb:AK105371.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g234309/11Omega-6 fatty acid desaturase, endoplasmic reticulum, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g23410Os.15112.1.S1_at9/117+13199366..13200849Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2, putative, expressed
LOC_Os07g23430Os.15139.1.S1_at9/117+13221598..13222864Omega-6 fatty acid desaturase, endoplasmic reticulum, putative, expressed
LOC_Os07g23440OsAffx.30725.2.S1_at10/117+13224111..13235492transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23440OsAffx.30725.2.S1_x_at10/117+13224111..13235492transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23440Os.47463.1.S1_x_at6/117+13224111..13235492transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23440Os.14491.2.S1_x_at5/117+13224111..13235492transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23440Os.27037.1.A1_at1/117+13224111..13235492transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23450OsAffx.16380.1.S1_at11/117+13244886..13245197Zinc finger, C2H2 type family protein
LOC_Os07g23450OsAffx.16380.1.S1_x_at11/117+13244886..13245197Zinc finger, C2H2 type family protein
LOC_Os07g23460OsAffx.21754.1.S1_x_at2/117+13246980..13253052retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006633biological_processfatty acid biosynthesis
GO:0006636biological_processfatty acid desaturation
GO:0009266biological_processresponse to temperature stimulus
GO:0005783cellular_componentendoplasmic reticulum
GO:0009507cellular_componentchloroplast
GO:0016720molecular_functiondelta12-fatty acid dehydrogenase activity
GO:0042389molecular_functionomega-3 fatty acid desaturase activity
GO:0045485molecular_functionomega-6 fatty acid desaturase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15139.1.S1_at--996--1171Chr07:13222628..13222652 (25 bp)
AGTACTACAAGTTTGACCGCACGCC
LOC_Os07g23430
Os.15139.1.S1_at--1090--3551Chr07:13222653..13222677 (25 bp)
CATCATCGAGGCAACATGGCGTGAG
LOC_Os07g23430
Os.15139.1.S1_at--61--991Chr07:13222682..13222706 (25 bp)
AGGAGTGCATGTACGTTGAGCCCAG
LOC_Os07g23430
Os.15139.1.S1_at--622--3491Chr07:13222689..13222713 (25 bp)
CATGTACGTTGAGCCCAGGGAGCGC
LOC_Os07g23430
Os.15139.1.S1_at--1095--5871Chr07:13222708..13222732 (25 bp)
GAGCGCGATGGTATCTACTGGTACA
LOC_Os07g23430
Os.15139.1.S1_at--795--3271Chr07:13222731..13222755 (25 bp)
CAACAACAAGTTTTAGCTACAGACA
LOC_Os07g23430
Os.15139.1.S1_at--148--10411Chr07:13222786..13222810 (25 bp)
TTATATACTTGGGTATGTCACTGCT
LOC_Os07g23430
Os.15139.1.S1_at--860--6911Chr07:13222798..13222822 (25 bp)
GTATGTCACTGCTTCTGAATAAATA
LOC_Os07g23430
Os.15139.1.S1_at--544--9011Chr07:13222813..13222837 (25 bp)
TGAATAAATATGGTGCTGGTCTCAC
LOC_Os07g23430
Os.15139.1.S1_at--354--2191Chr07:13222863..13222887 (25 bp)
ACACATTTTAGCTTATCGGTCTCAC
NONE
Os.15139.1.S1_at--569--491NONE
ATCGTGGACCTTAGTCCATTCCCAA
NONE
Target Sequence 
AGTACTACAAGTTTGACCGCACGCCCATCATCGAGGCAACATGGCGTGAGGCCAAGGAGTGCATGTACGTTGAGCCCAGG
GAGCGCGATGGTATCTACTGGTACAACAACAAGTTTTAGCTACAGACANGGGGATGAAATTAAGATATGATTATAAGTTT
TATATACTTGGGTATGTCACTGCTTCTGAATAAATATGGTGCTGGTCTCACNATAATTAATTAAGGGGACCGGNCNACAC
ATTTTAGCTTATCGGTCTCACANATCGTGGACCTTAGTCCATTCCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15139.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis