Browse Element(s) Details


OsAffx.16380.1.S1_at

Description gb:NM_188199.1
DB_XREF= gi:34903481
TID=OsAffx.16380.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0066B06.23 (OSJNBa0066B06.23), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2345011/11Zinc finger, C2H2 type family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g23430Os.15139.1.S1_at9/117+13221598..13222864Omega-6 fatty acid desaturase, endoplasmic reticulum, putative, expressed
LOC_Os07g23440OsAffx.30725.2.S1_at10/117+13224111..13235492transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23440OsAffx.30725.2.S1_x_at10/117+13224111..13235492transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23440Os.47463.1.S1_x_at6/117+13224111..13235492transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23440Os.14491.2.S1_x_at5/117+13224111..13235492transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23440Os.27037.1.A1_at1/117+13224111..13235492transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23450OsAffx.16380.1.S1_at11/117+13244886..13245197Zinc finger, C2H2 type family protein
LOC_Os07g23450OsAffx.16380.1.S1_x_at11/117+13244886..13245197Zinc finger, C2H2 type family protein
LOC_Os07g23460OsAffx.21754.1.S1_x_at2/117+13246980..13253052retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g23470OsAffx.28552.1.S1_at11/117+13255025..13256930Thaumatin family protein
LOC_Os07g23480NANA7+13259424..13269808retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16380.1.S1_at--1141--3931Chr07:13244920..13244944 (25 bp)
CGGCGGCGTCCTACTACGAGTGCAC
LOC_Os07g23450
OsAffx.16380.1.S1_at--1076--4691Chr07:13244922..13244946 (25 bp)
GCGGCGTCCTACTACGAGTGCACCT
LOC_Os07g23450
OsAffx.16380.1.S1_at--98--9251Chr07:13244928..13244952 (25 bp)
TCCTACTACGAGTGCACCTTCTGCA
LOC_Os07g23450
OsAffx.16380.1.S1_at--654--2791Chr07:13244952..13244976 (25 bp)
AAGAGGGGCTTCACCAACGCGCAGG
LOC_Os07g23450
OsAffx.16380.1.S1_at--396--671Chr07:13244991..13245015 (25 bp)
ATGAACATCCACCGCAAGGACCGGA
LOC_Os07g23450
OsAffx.16380.1.S1_at--558--4351Chr07:13245089..13245113 (25 bp)
CCAGCAGCACGGCAGAGATGTCCAC
LOC_Os07g23450
OsAffx.16380.1.S1_at--696--1511Chr07:13245091..13245115 (25 bp)
AGCAGCACGGCAGAGATGTCCACCT
LOC_Os07g23450
OsAffx.16380.1.S1_at--251--1511Chr07:13245094..13245118 (25 bp)
AGCACGGCAGAGATGTCCACCTGGG
LOC_Os07g23450
OsAffx.16380.1.S1_at--774--1931Chr07:13245097..13245121 (25 bp)
ACGGCAGAGATGTCCACCTGGGCCT
LOC_Os07g23450
OsAffx.16380.1.S1_at--188--5051Chr07:13245100..13245124 (25 bp)
GCAGAGATGTCCACCTGGGCCTCAC
LOC_Os07g23450
OsAffx.16380.1.S1_at--778--6191Chr07:13245138..13245162 (25 bp)
GAGGAAGAGAGGGACGGCGTCGACC
LOC_Os07g23450
Target Sequence 
CGGCGGCGTCCTACTACGAGTGCACCTTCTGCAAGAGGGGCTTCACCAACGCGCAGGCGCTCGGGGGCCACATGAACATC
CACCGCAAGGACCGGAGCGCCGGCGGCAAGTCGCAGGGCGGCGGCCAGCACCACGAAGGCGGCGGCAGCGGCAGCGGTGG
CGGCGGCGGCCAGCAGCACGGCAGAGATGTCCACCTGGGCCTCACCCTGGGGAGGAACGAGGAAGAGAGGGACGGCGTCG
ACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16380.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis