Browse Element(s) Details


OsAffx.28552.1.S1_at

Description tigr:9635.m02234
TID=OsAffx.28552.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Thaumatin family
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2347011/11Thaumatin family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g23440OsAffx.30725.2.S1_at10/117+13224111..13235492transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23440OsAffx.30725.2.S1_x_at10/117+13224111..13235492transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23440Os.47463.1.S1_x_at6/117+13224111..13235492transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23440Os.14491.2.S1_x_at5/117+13224111..13235492transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23440Os.27037.1.A1_at1/117+13224111..13235492transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23450OsAffx.16380.1.S1_at11/117+13244886..13245197Zinc finger, C2H2 type family protein
LOC_Os07g23450OsAffx.16380.1.S1_x_at11/117+13244886..13245197Zinc finger, C2H2 type family protein
LOC_Os07g23460OsAffx.21754.1.S1_x_at2/117+13246980..13253052retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g23470OsAffx.28552.1.S1_at11/117+13255025..13256930Thaumatin family protein
LOC_Os07g23480NANA7+13259424..13269808retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g23494Os.43624.1.S1_at6/117+13274520..13281970hypothetical protein
LOC_Os07g23494OsAffx.2182.1.S1_at1/117+13274520..13281970hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0042828biological_processresponse to pathogen
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28552.1.S1_at--36--7671Chr07:13255585..13255609 (25 bp)
GGGTTCGAGCTGCAGCCGGGCGCGT
LOC_Os07g23470
OsAffx.28552.1.S1_at--531--7091Chr07:13255543..13255567 (25 bp)
GTCCCGGACAACTGGTCGGGCAACA
LOC_Os07g23470
OsAffx.28552.1.S1_at--408--2571Chr07:13255534..13255558 (25 bp)
AACTGGTCGGGCAACATCTGGGCCC
LOC_Os07g23470
OsAffx.28552.1.S1_at--407--9431Chr07:13255486..13255510 (25 bp)
TCGGGCCGCTTCTCGTGCGAGTCCG
LOC_Os07g23470
OsAffx.28552.1.S1_at--57--1791Chr07:13255405..13255429 (25 bp)
ACGCTGTCCGAGTTCACGCTACGCG
LOC_Os07g23470
OsAffx.28552.1.S1_at--651--4071Chr07:13255397..13255421 (25 bp)
CGAGTTCACGCTACGCGGCGGCAGC
LOC_Os07g23470
OsAffx.28552.1.S1_at--506--5631Chr07:13255366..13255390 (25 bp)
GACACGGACTTCTACGACATCAGCA
LOC_Os07g23470
OsAffx.28552.1.S1_at--206--2091Chr07:13255350..13255374 (25 bp)
ACATCAGCAACGTGGACGGGTTCAA
LOC_Os07g23470
OsAffx.28552.1.S1_at--727--2771Chr07:13255201..13255225 (25 bp)
AAGAGCGGGTGCCTGGCGTTCGGCC
LOC_Os07g23470
OsAffx.28552.1.S1_at--798--4491Chr07:13255127..13255151 (25 bp)
GCCGAGCCAGTACTCCAAGTTCTTC
LOC_Os07g23470
OsAffx.28552.1.S1_at--597--9932Chr07:13255069..13255093 (25 bp)
TACGACGACAAGAGCAGCACCTTCA
LOC_Os07g23470
Target Sequence 
GGGTTCGAGCTGCAGCCGGGCGCGTCCGCCGCGTACGACGGGGTCCCGGACAACTGGTCGGGCAACATCTGGGCCCGGCG
GCTCTGCTCCACGGACGCCTCGGGCCGCTTCTCGTGCGAGTCCGGCGACTGCGGCACGGGCCGCGTGGAGTGCGACGGCA
GGGGCAACGGCCCGCCGTCGACGCTGTCCGAGTTCACGCTACGCGGCGGCAGCGCCCGCGACACGGACTTCTACGACATC
AGCAACGTGGACGGGTTCAACGTGCCCGTGCAGGTGGCGCCGTCGGGCGCCGGGTGCTCGGCGGTGGCGTGCGCGGCCGA
CATCGACGCGTCGTGCCCCGCGGAGCTGGCGGTGAAGGGCGCCGGCGGCGCGGTGGTGGGGTGCAAGAGCGGGTGCCTGG
CGTTCGGCCGGGACGACCTGTGCTGCCGCGGGGCGTACGGGACGCCGGACAAGTGCCCGCCGAGCCAGTACTCCAAGTTC
TTCAAGGACAAGTGCCCGCAGGCGTACAGCTACGCCTACGACGACAAGAGCAGCACCTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28552.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis