Browse Element(s) Details


Os.15365.1.S1_at

Description gb:AK059568.1
DB_XREF= gi:32969586
TID=Os.15365.1
CNT=21
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15365 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-029-H11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-029-H11, full insert sequence.
FL= gb:AK059568.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3786011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g37840Os.18879.1.S2_at11/1112+23215284..23219764Boron transporter 1, putative, expressed
LOC_Os12g37840Os.18879.1.S1_at11/1112+23215284..23219764Boron transporter 1, putative, expressed
LOC_Os12g37850OsAffx.32074.1.S1_at10/1112+23222638..23225082expressed protein
LOC_Os12g37860Os.15365.1.S1_at11/1112+23232491..23239375expressed protein
LOC_Os12g37870Os.6425.1.S1_at11/1112+23241560..23245604ATP-citrate synthase, putative, expressed
LOC_Os12g37880Os.18647.1.S1_at6/1112+23246399..23249085expressed protein
LOC_Os12g37890Os.16918.1.S1_at11/1112+23250365..23259137expressed protein
LOC_Os12g37900NANA12+23259935..23260482expressed protein
LOC_Os12g37910Os.14915.1.S1_a_at11/1112+23261363..23265644GDSL-like Lipase/Acylhydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15365.1.S1_at--971--1971Chr12:23238789..23238813 (25 bp)
ACTGCAGGCTATCTTTTGTTGGGTG
LOC_Os12g37860
Os.15365.1.S1_at--1102--4411Chr12:23238859..23238883 (25 bp)
GCCAGTGACTGGTGTGATGCCCGAT
LOC_Os12g37860
Os.15365.1.S1_at--662--1791Chr12:23238893..23238917 (25 bp)
ACCCCGTCGTGTCTAACATGTTCAG
LOC_Os12g37860
Os.15365.1.S1_at--368--9771Chr12:23238985..23239009 (25 bp)
TAATGGATTTTGTCTGTGCAGGGCC
LOC_Os12g37860
Os.15365.1.S1_at--587--10871Chr12:23239012..23239036 (25 bp)
TTGGCCCTTTACGTGTGATTGTTAA
LOC_Os12g37860
Os.15365.1.S1_at--21--9751Chr12:23239034..23239058 (25 bp)
TAATTGTTCTCAGGAGCATCCCTCC
LOC_Os12g37860
Os.15365.1.S1_at--699--9311Chr12:23239056..23239080 (25 bp)
TCCCTTGCTTCGGTGAGATGTGATG
LOC_Os12g37860
Os.15365.1.S1_at--734--7671Chr12:23239206..23239230 (25 bp)
GGGATTCTGCAGGACAGACTCTGAT
LOC_Os12g37860
Os.15365.1.S1_at--867--6332Chr12:23239285..23239309 (25 bp)
GATGCTTGGTTTTATTCTCTTAATA
LOC_Os12g37860
Os.15365.1.S1_at--721--7891Chr12:23239317..23239341 (25 bp)
GGTTCATGATCCTGGCAATTTGCCC
LOC_Os12g37860
Os.15365.1.S1_at--8--9171Chr12:23239337..23239361 (25 bp)
TGCCCACCAGTCTCTGTGGTAATAT
LOC_Os12g37860
Target Sequence 
ACTGCAGGCTATCTTTTGTTGGGTGATTCACAGCAGGTAGATGAATGGAGTATCTGGATCAAAACCTGATGCCAGTGACT
GGTGTGATGCCCGATGTCATCTCGACCCCGTCGTGTCTAACATGTTCAGAGATTAGCAGGTCAAAAGCTATGGCTGCCGT
TCGCCGTCTTTGACGGCGGAGAGTAGTAGTAGGATGTAATGGATTTTGTCTGTGCAGGGCCGTTTGGCCCTTTACGTGTG
ATTGTTAATTGTTCTCAGGAGCATCCCTCCCTTGCTTCGGTGAGATGTGATGTGATGTTGATGTTGGAATGTACTAACTT
GGAGTTGATTGAGAACCGGAGTTGATTGAGAACCGGGGTTATATTAGTTAGTAGTATGTAAACAGAAAAAANTAGTTCGT
TTTGGGCGATCTGTTGTGGGGATTCTGCAGGACAGACTCTGATATTATCATATCATGTTCATATCGTGTTTGTGTTATCT
GGGGAGGTCAGAATTGAGATGCTTGGTTTTATTCTCTTAATAGACATATGGTTCATGATCCTGGCAATTTGCCCACCAGT
CTCTGTGGTAATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15365.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis