Browse Element(s) Details


Os.18879.1.S2_at

Description gb:AK070617.1
DB_XREF= gi:32980641
TID=Os.18879.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.18879 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023099M11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023062N03, full insert sequence.
FL= gb:AY339063.1 gb:AK060451.1 gb:AK070617.1 gb:AK100510.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3784011/11Boron transporter 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g37810OsAffx.32166.1218.S1_x_at9/1112+23181993..23190466retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g37820Os.7307.3.S1_x_at2/1112+23193598..23194689retrotransposon protein, putative, unclassified
LOC_Os12g37830Os.53472.1.S1_at11/1112+23202580..23205547hAT family dimerisation domain containing protein, expressed
LOC_Os12g37840Os.18879.1.S2_at11/1112+23215284..23219764Boron transporter 1, putative, expressed
LOC_Os12g37840Os.18879.1.S1_at11/1112+23215284..23219764Boron transporter 1, putative, expressed
LOC_Os12g37850OsAffx.32074.1.S1_at10/1112+23222638..23225082expressed protein
LOC_Os12g37860Os.15365.1.S1_at11/1112+23232491..23239375expressed protein
LOC_Os12g37870Os.6425.1.S1_at11/1112+23241560..23245604ATP-citrate synthase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0046713biological_processboron transport
GO:0005737cellular_componentcytoplasm
GO:0005768cellular_componentendosome
GO:0005886cellular_componentplasma membrane
GO:0015380molecular_functionanion exchanger activity
GO:0046715molecular_functionboron transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18879.1.S2_at--713--5591Chr12:23219224..23219248 (25 bp)
GAAATCAAGCGCCTGAACAGTCCTA
LOC_Os12g37840
Os.18879.1.S2_at--960--8971Chr12:23219237..23219261 (25 bp)
TGAACAGTCCTAAGATCACCAGCTC
LOC_Os12g37840
Os.18879.1.S2_at--20--7731Chr12:23219263..23219287 (25 bp)
GGTGGCACACCAGTGGCAGAACTTA
LOC_Os12g37840
Os.18879.1.S2_at--134--6911Chr12:23219306..23219330 (25 bp)
GTATCTCTGAGAGGGCATACAGCCC
LOC_Os12g37840
Os.18879.1.S2_at--1054--9851Chr12:23219323..23219347 (25 bp)
TACAGCCCTTGTATCACCGAGTTGA
LOC_Os12g37840
Os.18879.1.S2_at--1058--9671Chr12:23219336..23219360 (25 bp)
TCACCGAGTTGAGGCATGACCGCAG
LOC_Os12g37840
Os.18879.1.S2_at--774--8931Chr12:23219352..23219376 (25 bp)
TGACCGCAGCCCTCTAGGAGGAAGA
LOC_Os12g37840
Os.18879.1.S2_at--943--5811Chr12:23219397..23219421 (25 bp)
GACCCGATCGTCCAAGTTGGGCGAA
LOC_Os12g37840
Os.18879.1.S2_at--926--5911Chr12:23219465..23219489 (25 bp)
GAGCTATGCAACTACCTGAAATCAG
LOC_Os12g37840
Os.18879.1.S2_at--245--871Chr12:23219515..23219539 (25 bp)
ATGGCGTACGGTTATATGATGTCTT
LOC_Os12g37840
Os.18879.1.S2_at--1083--6811Chr12:23219573..23219597 (25 bp)
GTTTATGTATATCTCTAGCCTAGTA
LOC_Os12g37840
Target Sequence 
GAAATCAAGCGCCTGAACAGTCCTAAGATCACCAGCTCCGGTGGCACACCAGTGGCAGAACTTAAAGGAATCCGCAGNCC
TTGTATCTCTGAGAGGGCATACAGCCCTTGTATCACCGAGTTGAGGCATGACCGCAGCCCTCTAGGAGGAAGAGGCAGCC
CAAGGACCGGTGAGACCCGATCGTCCAAGTTGGGCGAAGGATCAACACCAAAGTGAAGCAAGAATGATGCACTGCTCATA
TGAGCTATGCAACTACCTGAAATCAGCTATACTAATGATTTCTGTATAACTATGGCGTACGGTTATATGATGTCTTATGA
TCAAGTATCAAGTATGAGTCTATGAGAATGTTTATGTATATCTCTAGCCTAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18879.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis