Browse Element(s) Details


Os.53472.1.S1_at

Description gb:AK072828.1
DB_XREF= gi:32982851
TID=Os.53472.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53472 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023136K21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023136K21, full insert sequence.
FL= gb:AK072828.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3783011/11hAT family dimerisation domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g37810OsAffx.32166.1218.S1_x_at9/1112+23181993..23190466retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g37820Os.7307.3.S1_x_at2/1112+23193598..23194689retrotransposon protein, putative, unclassified
LOC_Os12g37830Os.53472.1.S1_at11/1112+23202580..23205547hAT family dimerisation domain containing protein, expressed
LOC_Os12g37840Os.18879.1.S2_at11/1112+23215284..23219764Boron transporter 1, putative, expressed
LOC_Os12g37840Os.18879.1.S1_at11/1112+23215284..23219764Boron transporter 1, putative, expressed
LOC_Os12g37850OsAffx.32074.1.S1_at10/1112+23222638..23225082expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53472.1.S1_at--374--5271Chr12:23204503..23204527 (25 bp)
GAATGTTTTGCTTGACCATGTTAAA
LOC_Os12g37830
Os.53472.1.S1_at--184--331Chr12:23204553..23204577 (25 bp)
ATACTCGTTGGGAGAGTCGCATCAA
LOC_Os12g37830
Os.53472.1.S1_at--318--7591Chr12:23204586..23204610 (25 bp)
GGGCTATTAGATATCAAGCTCCTCA
LOC_Os12g37830
Os.53472.1.S1_at--724--4791Chr12:23204603..23204627 (25 bp)
GCTCCTCAACTAAGGTCAGCTTTGT
LOC_Os12g37830
Os.53472.1.S1_at--873--9051Chr12:23204694..23204718 (25 bp)
TGCTTGGCAGCTTTGAGTTCATACT
LOC_Os12g37830
Os.53472.1.S1_at--119--7071Chr12:23204766..23204790 (25 bp)
GTAAGAAGTTGCAATCACCATCCAT
LOC_Os12g37830
Os.53472.1.S1_at--730--9673Chr12:23204780..23204804 (25 bp)
TCACCATCCATGTGCATTGATTCTA
LOC_Os12g37830
Os.53472.1.S1_at--52--4951Chr12:23204793..23204817 (25 bp)
GCATTGATTCTACCTTACAGCATAT
LOC_Os12g37830
Os.53472.1.S1_at--875--6491Chr12:23204867..23204891 (25 bp)
GATAGTCTGGTTGCAGCCACAGAAA
LOC_Os12g37830
Os.53472.1.S1_at--597--1171Chr12:23204908..23204932 (25 bp)
AGTAGAGCCATCCTTCCCAGTAGAG
LOC_Os12g37830
Os.53472.1.S1_at--808--9311Chr12:23204922..23204946 (25 bp)
TCCCAGTAGAGCGTCAGTCTCAAAG
LOC_Os12g37830
Target Sequence 
GAATGTTTTGCTTGACCATGTTAAAGATTTGACTGTGAAATCATTGAGCAATACTCGTTGGGAGAGTCGCATCAAAAGTG
TCAGGGCTATTAGATATCAAGCTCCTCAACTAAGGTCAGCTTTGTTGTGGCTAAGTGAGGGTAGAGATACTGAACCAAAG
GACAGGAGTGATGCAAAAAATTTATATGACGTGCTTGGCAGCTTTGAGTTCATACTTGGAATGGTTATTTGGCATGACAT
TCTATATTCTGTAAATATTGTCAGTAAGAAGTTGCAATCACCATCCATGTGCATTGATTCTACCTTACAGCATATAGAAG
GTATGGTGAGTTACTTTCAGAGCTATAGAAATAATGGGTTTGCTGATAGTCTGGTTGCAGCCACAGAAATTGCACTTGAA
ATGGGAGTAGAGCCATCCTTCCCAGTAGAGCGTCAGTCTCAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53472.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis