Browse Element(s) Details


Os.15758.1.S1_a_at

Description gb:AK120572.1
DB_XREF= gi:37990195
TID=Os.15758.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.15758 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0519D04.38 (P0519D04.38), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013134G21, full insert sequence.
FL= gb:AK120572.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4951011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g49470Os.27942.1.A1_at10/111+28774735..28785594CHY zinc finger family protein, expressed
LOC_Os01g49470OsAffx.27359.1.S1_x_at1/111+28774735..28785594CHY zinc finger family protein, expressed
LOC_Os01g49480OsAffx.23727.1.S1_x_at11/111+28790950..28791281hypothetical protein
LOC_Os01g49480OsAffx.23727.1.S1_at11/111+28790950..28791281hypothetical protein
LOC_Os01g49480OsAffx.9277.1.S1_x_at3/111+28790950..28791281hypothetical protein
LOC_Os01g49490Os.46002.1.S1_at11/111+28794537..28798019expressed protein
LOC_Os01g49490OsAffx.11531.1.S1_at10/111+28794537..28798019expressed protein
LOC_Os01g49500Os.37083.2.S1_at1/111+28803760..28804086retrotransposon protein, putative, unclassified
LOC_Os01g49510Os.15758.1.S1_a_at11/111+28806125..28809660expressed protein
LOC_Os01g49529Os.41662.1.S1_at11/111+28809781..28823023Protein kinase domain containing protein, expressed
LOC_Os01g49529Os.9943.1.S1_s_at11/111+28809781..28823023Protein kinase domain containing protein, expressed
LOC_Os01g49529Os.9943.5.S1_x_at11/111+28809781..28823023Protein kinase domain containing protein, expressed
LOC_Os01g49529Os.41662.1.S1_x_at11/111+28809781..28823023Protein kinase domain containing protein, expressed
LOC_Os01g49529Os.9943.4.S1_at11/111+28809781..28823023Protein kinase domain containing protein, expressed
LOC_Os01g49529Os.9943.5.S1_s_at11/111+28809781..28823023Protein kinase domain containing protein, expressed
LOC_Os01g49529Os.9943.2.S1_x_at11/111+28809781..28823023Protein kinase domain containing protein, expressed
LOC_Os01g49529Os.11986.3.S1_x_at1/111+28809781..28823023Protein kinase domain containing protein, expressed
LOC_Os01g49550OsAffx.11532.1.S1_at10/111+28825470..28827934hypothetical protein
LOC_Os01g49560OsAffx.21488.1.S1_at11/111+28829211..28830102hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15758.1.S1_a_at--1005--5151Chr01:28809087..28809111 (25 bp)
GCAAGCTCTGAGAAACCCCAAGAAG
LOC_Os01g49510
Os.15758.1.S1_a_at--1009--2731Chr01:28809106..28809130 (25 bp)
AAGAAGCTCCAAAGTGCTCCCAGAT
LOC_Os01g49510
Os.15758.1.S1_a_at--139--8571Chr01:28809175..28809199 (25 bp)
TGGATGTTCCTGAAAAGCCACGAAT
LOC_Os01g49510
Os.15758.1.S1_a_at--1000--231Chr01:28809251..28809275 (25 bp)
ATATATGATGTGATCCTCTGCGCGG
LOC_Os01g49510
Os.15758.1.S1_a_at--804--4571Chr01:28809270..28809294 (25 bp)
GCGCGGTTCATGTAGCAGTAGCTGA
LOC_Os01g49510
Os.15758.1.S1_a_at--597--8171Chr01:28809341..28809365 (25 bp)
GGAACATACCAGCAGTTCAAGCAGT
LOC_Os01g49510
Os.15758.1.S1_a_at--713--10431Chr01:28809375..28809399 (25 bp)
TTACGGGACCGGAATATGAGCTGTT
LOC_Os01g49510
Os.15758.1.S1_a_at--607--7671Chr01:28809485..28809509 (25 bp)
GGGTAAATTAACACGTACGCCATCA
LOC_Os01g49510
Os.15758.1.S1_a_at--799--411Chr01:28809506..28809530 (25 bp)
ATCATCCTGTTTTGCAACGCCAGTA
LOC_Os01g49510
Os.15758.1.S1_a_at--489--2611Chr01:28809521..28809545 (25 bp)
AACGCCAGTAGGATTTCCATCATGT
LOC_Os01g49510
Os.15758.1.S1_a_at--563--2411Chr01:28809582..28809606 (25 bp)
AAAAAACTGAAAATTTGCTGCCGCT
LOC_Os01g49510
Target Sequence 
GCAAGCTCTGAGAAACCCCAAGAAGCTCCAAAGTGCTCCCAGATCTCACGAAAGAGCTTAGATAGTCGAGTTGGGAAATC
AAAAACTGTGGATGTTCCTGAAAAGCCACGAATGAGCTCAGATGATGTCGACAAGTTCAGGAGGAGAAGATGTTTGGTCT
GGTGATATATGATGTGATCCTCTGCGCGGTTCATGTAGCAGTAGCTGAATACAATAGCATGAAAATCGAGCAACTGTATT
ACATCGTATAGCGAGGAACATACCAGCAGTTCAAGCAGTTCTTATGCCTTACGGGACCGGAATATGAGCTGTTAAATAAG
GGAGAAGGATCAGTATGCTGCTGGAGTAAATTATCATATATCCATCAATGAACTGAATCTCAACAATGGTAACATCATGG
GTAAATTAACACGTACGCCATCATCCTGTTTTGCAACGCCAGTAGGATTTCCATCATGTAAAAGNGTACCATTATTGTCT
GTAATCATGAGGGACAAAAAACTGAAAATTTGCTGCCGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15758.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis