Browse Element(s) Details


Os.15792.1.S1_at

Description gb:AU033096
DB_XREF= gi:3769069
DB_XREF=AU033096
CLONE=S2869_1Z
TID=Os.15792.1
CNT=5
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.15792 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_567863.1 (A.thaliana) Expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0847011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g08440Os.19406.1.S1_at11/116+4136249..4141662Two-component response regulator ARR12, putative, expressed
LOC_Os06g08450OsAffx.15311.1.S1_at11/116+4141852..4149977ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein
LOC_Os06g08460NANA6+4160338..4161798Exo70 exocyst complex subunit family protein
LOC_Os06g08470Os.15792.1.S1_at11/116+4161948..4166025expressed protein
LOC_Os06g08480Os.10925.1.S1_at11/116+4166231..4182563Type III restriction enzyme, res subunit family protein, expressed
LOC_Os06g08490Os.6257.1.S1_at11/116+4188087..4189564expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15792.1.S1_at--1090--8871Chr06:4162676..4162700 (25 bp)
TGAGGCGCACACACTGGAAACAACA
LOC_Os06g08470
Os.15792.1.S1_at--223--691Chr06:4162644..4162668 (25 bp)
ATGAGCCTCTTCAGCGTATTTTTGC
LOC_Os06g08470
Os.15792.1.S1_at--995--10211Chr06:4162450..4162474 (25 bp)
TATTGGAAATCCCAGCCCTGATGAC
LOC_Os06g08470
Os.15792.1.S1_at--179--10471Chr06:4162424..4162448 (25 bp)
TTACAAGCTCAGATGGTTTCCTCCT
LOC_Os06g08470
Os.15792.1.S1_at--584--10291Chr06:4162408..4162432 (25 bp)
TTTCCTCCTGCATATAGTCAACCTT
LOC_Os06g08470
Os.15792.1.S1_at--842--2611Chr06:4162289..4162413 (25 bp)
AACCTTCTTGAGATGGAGTCCCTTT
LOC_Os06g08470
Os.15792.1.S1_at--639--3531Chr06:4162220..4162244 (25 bp)
CATCATCGACTAGAAGCCTTGTAAA
LOC_Os06g08470
Os.15792.1.S1_at--728--6911Chr06:4162193..4162217 (25 bp)
GTATGCCTTCAAATTTCTAGCTCAT
LOC_Os06g08470
Os.15792.1.S1_at--307--10011Chr06:4162176..4162200 (25 bp)
TAGCTCATGATCTCAGCATTCCTGG
LOC_Os06g08470
Os.15792.1.S1_at--288--211Chr06:4162090..4162114 (25 bp)
ATTTGCTATCTCTTTAGGCGTTCAG
LOC_Os06g08470
Os.15792.1.S1_at--656--8731Chr06:4162061..4162085 (25 bp)
TGTAGCAAATTCAGTCTTTTTTCCG
LOC_Os06g08470
Target Sequence 
TGAGGCGCACACACTGGAAACAACAAAGTTGTATGAGCCTCTTCAGCGTATTTTTGCAAAATATGGAGTGAATGCATATA
TTAGCACGGGAGGTCATNGTGGTTACTTCCNNGTCANGACANTTCAATGCTGTATATTGGAAATCCCAGCCCTGATGACC
TTACAAGCTCAGATGGTTTCCTCCTGCATATAGTCAACCTTCTTGAGATGGAGTCCCTTTTGATAAATTTAGAAGGCAAG
GNGGNTGAAAGATTTGTAGTAAANCATCATCGACTAGAAGCCTTGTAAATTGTATGCCTTCAAATTTCTAGCTCATGATC
TCAGCATTCCTGGATTAAATCTTGCCAGTATATCACAAACCACACAGATTCGTATTGAATTGCATCCGATTTGTATTTGC
TATCTCTTTAGGCGTTCAGATTNTGTAGCAAATTCAGTCTTTTTTCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15792.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis