Browse Element(s) Details


Os.16326.1.S1_at

Description gb:AK100333.1
DB_XREF= gi:32985542
TID=Os.16326.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.16326 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023080N01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023080N01, full insert sequence.
FL= gb:AK100333.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1778010/11Ent-kaurene synthase A, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g17750NANA2+10248300..10251632transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g17760Os.41248.2.A1_at11/112+10261984..10268670Cytochrome P450 family protein, expressed
LOC_Os02g17760Os.41248.5.S1_x_at5/112+10261984..10268670Cytochrome P450 family protein, expressed
LOC_Os02g17770NANA2+10271262..10271663hypothetical protein
LOC_Os02g17780Os.16326.1.S1_at10/112+10273717..10283725Ent-kaurene synthase A, chloroplast precursor, putative, expressed
LOC_Os02g17790NANA2+10292506..10294000hypothetical protein
LOC_Os02g17800NANA2+10294469..10296923Transposable element protein, putative, Retrotrans_gag
LOC_Os02g17810OsAffx.3940.1.S1_at1/112+10298465..10301397retrotransposon protein, putative, unclassified
LOC_Os02g17820OsAffx.20387.1.S1_x_at1/112+10301933..10308307retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0009686biological_processgibberellic acid biosynthesis
GO:0009740biological_processgibberellic acid mediated signaling
GO:0009507cellular_componentchloroplast
GO:0009536cellular_componentplastid
GO:0009899molecular_functionent-kaurene synthase activity
GO:0009905molecular_functionent-copalyl diphosphate synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16326.1.S1_at--512--3171Chr02:10274880..10274904 (25 bp)
AATTGTTGAAATTTGTGCTGGACGA
LOC_Os02g17780
Os.16326.1.S1_at--215--5791Chr02:10274860..10274884 (25 bp)
GACGAATTGAGGAGGCAGCATCTAT
LOC_Os02g17780
Os.16326.1.S1_at--1122--991Chr02:10274820..10274844 (25 bp)
AGGTTCTTGGTTTATTCAACTTGCT
LOC_Os02g17780
Os.16326.1.S1_at--263--9711Chr02:10274805..10274829 (25 bp)
TCAACTTGCTTCCTCTATTTGCGAT
LOC_Os02g17780
Os.16326.1.S1_at--92--10211Chr02:10274790..10274814 (25 bp)
TATTTGCGATTCTCTTCATGCCAAG
LOC_Os02g17780
Os.16326.1.S1_at--845--6271NONE
GATGTTACTTTCACAGGATACCAAG
NONE
Os.16326.1.S1_at--521--6051Chr02:10274087..10274111 (25 bp)
GAGTTGGGTATGCAAGAACTTGCTC
LOC_Os02g17780
Os.16326.1.S1_at--1044--5471Chr02:10274072..10274096 (25 bp)
GAACTTGCTCAATATCTTCTTCCAA
LOC_Os02g17780
Os.16326.1.S1_at--84--2731Chr02:10274015..10274039 (25 bp)
AAGCAGACCTTCTTGAGCATTGTGA
LOC_Os02g17780
Os.16326.1.S1_at--624--8871Chr02:10273761..10273785 (25 bp)
TGATGTATCTCTGTATGGTTCTACA
LOC_Os02g17780
Os.16326.1.S1_at--901--6911Chr02:10273749..10273773 (25 bp)
GTATGGTTCTACATGTGGGACACAT
LOC_Os02g17780
Target Sequence 
AATTGTTGAAATTTGTGCTGGACGAATTGAGGAGGCAGCATCTATGATAAATAACACCGAAGGTTCTTGGTTTATTCAAC
TTGCTTCCTCTATTTGCGATTCTCTTCATGCCAAGATGTTACTTTCACAGGATACCAAGAAAAATGAGACNACAATAAAT
CAAATTNACAAGGAAATTGAGTTGGGTATGCAAGAACTTGCTCAATATCTTCTTCCAAGAGTTGATGATAGAAGAATTAA
CAACAAAACCAAGCAGACCTTCTTGAGCATTGTGAAAAGCTGTTACTATGCTGCCAATTGCTCACCACATATGCTTGACC
AACACATTTCTGAAGTGATTTTTGAGCAAGTTATTTGAAATAAAGTTTAGGCAAATAGAGCATTTGTCAGATTGAATCGC
ATGTNAATATTTCTGTGCAGAAAAAATATGTAAAGAATGAGAGAGAACAAGCATATAAACAATAGTATTATTGTTGAAAG
CTAACAATTTTTACATCAAGTGAATGATGTATCTCTGTATGGTTCTACATGTGGGACACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16326.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis