Browse Element(s) Details


Os.16918.1.S1_at

Description gb:AK059552.1
DB_XREF= gi:32969570
TID=Os.16918.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.16918 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-029-G04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-029-G04, full insert sequence.
FL= gb:AK059552.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3789011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g37860Os.15365.1.S1_at11/1112+23232491..23239375expressed protein
LOC_Os12g37870Os.6425.1.S1_at11/1112+23241560..23245604ATP-citrate synthase, putative, expressed
LOC_Os12g37880Os.18647.1.S1_at6/1112+23246399..23249085expressed protein
LOC_Os12g37890Os.16918.1.S1_at11/1112+23250365..23259137expressed protein
LOC_Os12g37900NANA12+23259935..23260482expressed protein
LOC_Os12g37910Os.14915.1.S1_a_at11/1112+23261363..23265644GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os12g37920OsAffx.32075.1.S1_at11/1112+23269146..23272653expressed protein
LOC_Os12g37920Os.56047.1.S1_at3/1112+23269146..23272653expressed protein
LOC_Os12g37939Os.56047.1.S1_at11/1112+23274368..23281948UNC93 homolog A, putative, expressed
LOC_Os12g37939OsAffx.7824.1.S1_s_at10/1112+23274368..23281948UNC93 homolog A, putative, expressed
LOC_Os12g37939Os.37965.1.S1_at9/1112+23274368..23281948UNC93 homolog A, putative, expressed
LOC_Os12g37939OsAffx.32075.1.S1_at2/1112+23274368..23281948UNC93 homolog A, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16918.1.S1_at--932--7351Chr12:23258549..23258573 (25 bp)
GTGAAGAGATTCTACCAGCAGGCAA
LOC_Os12g37890
Os.16918.1.S1_at--193--6731Chr12:23258587..23258611 (25 bp)
GTTCTCCTTCAAGCTATGGCACTCT
LOC_Os12g37890
Os.16918.1.S1_at--314--10111Chr12:23258601..23258625 (25 bp)
TATGGCACTCTTACTTGAACTCCTG
LOC_Os12g37890
Os.16918.1.S1_at--1102--10731Chr12:23258615..23258639 (25 bp)
TTGAACTCCTGTAAGGCCAGTGGGA
LOC_Os12g37890
Os.16918.1.S1_at--1024--5931Chr12:23258638..23258662 (25 bp)
GAGCAGCACAGAGAGCATCGCCGAA
LOC_Os12g37890
Os.16918.1.S1_at--465--5931Chr12:23258650..23258674 (25 bp)
GAGCATCGCCGAAGCTGCGAGGCAA
LOC_Os12g37890
Os.16918.1.S1_at--1090--4171Chr12:23258714..23258738 (25 bp)
CCCTCTTGGTTTGATGACGTGGCGA
LOC_Os12g37890
Os.16918.1.S1_at--354--91Chr12:23258738..23258762 (25 bp)
ATTCGCCAGGTGGAGCTGTAGTTAG
LOC_Os12g37890
Os.16918.1.S1_at--66--10331Chr12:23258824..23258848 (25 bp)
TTTCTTCTTGTTTAGGCACAGGTTT
LOC_Os12g37890
Os.16918.1.S1_at--701--4371Chr12:23258964..23258988 (25 bp)
CCACAGAGTGGAGTTTTGGCTGACT
LOC_Os12g37890
Os.16918.1.S1_at--965--10111Chr12:23259037..23259061 (25 bp)
TATGTTTGTTTACCCTGTTGCAGTG
LOC_Os12g37890
Target Sequence 
GTGAAGAGATTCTACCAGCAGGCAACCTCAGTCTACCCGTTCTCCTTCAAGCTATGGCACTCTTACTTGAACTCCTGTAA
GGCCAGTGGGAGCAGCACAGAGAGCATCGCCGAAGCTGCGAGGCAACGGGGCATCGAGCTGAGCGTAACGCCTCCCTAGC
AGGGGCCCTCTTGGTTTGATGACGTGGCGATTCGCCAGGTGGAGCTGTAGTTAGTGTTGTGTTTACTGGAAAGTGAGAGT
AGATACACCCGGTGGTGATGGGGCGACTGGATAATTTTCTTCTTGTTTAGGCACAGGTTTAGTGACACATAGGCGGTGGA
TACCAACCATACCATACATCACAGCAGCTGCTGTTACTGATGGTGTGACTTATGGATCAAAAAAAGAGGATATAGGCATA
CGGTTTTGCATGCCCCCACAGAGTGGAGTTTTGGCTGACTCGAGAGTATGATGTTTTTGTAGGCAGATTTCTTGATCTGT
TTCAGGTTTATGTTTGTTTACCCTGTTGCAGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16918.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis