Browse Element(s) Details


OsAffx.32075.1.S1_at

Description tigr:9640.m03685
TID=OsAffx.32075.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to BT004735 At3g09470F11F8_4
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3792011/11expressed protein
LOC_Os12g379392/11UNC93 homolog A, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g37870Os.6425.1.S1_at11/1112+23241560..23245604ATP-citrate synthase, putative, expressed
LOC_Os12g37880Os.18647.1.S1_at6/1112+23246399..23249085expressed protein
LOC_Os12g37890Os.16918.1.S1_at11/1112+23250365..23259137expressed protein
LOC_Os12g37900NANA12+23259935..23260482expressed protein
LOC_Os12g37910Os.14915.1.S1_a_at11/1112+23261363..23265644GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os12g37920OsAffx.32075.1.S1_at11/1112+23269146..23272653expressed protein
LOC_Os12g37920Os.56047.1.S1_at3/1112+23269146..23272653expressed protein
LOC_Os12g37939Os.56047.1.S1_at11/1112+23274368..23281948UNC93 homolog A, putative, expressed
LOC_Os12g37939OsAffx.7824.1.S1_s_at10/1112+23274368..23281948UNC93 homolog A, putative, expressed
LOC_Os12g37939Os.37965.1.S1_at9/1112+23274368..23281948UNC93 homolog A, putative, expressed
LOC_Os12g37939OsAffx.32075.1.S1_at2/1112+23274368..23281948UNC93 homolog A, putative, expressed
LOC_Os12g37960Os.21433.1.S1_at11/1112+23284584..23289908Diaminopimelate epimerase, putative, expressed
LOC_Os12g37970Os.11638.1.S1_at11/1112+23292073..23293502myb family transcription factor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32075.1.S1_at--237--10571Chr12:23269685..23269709 (25 bp)
TTCTTTTTTACAGGTTTGGCTTCAT
LOC_Os12g37920
OsAffx.32075.1.S1_at--313--2131Chr12:23269676..23269700 (25 bp)
ACAGGTTTGGCTTCATGAATCATCA
LOC_Os12g37920
OsAffx.32075.1.S1_at--381--5251Chr12:23269660..23269684 (25 bp)
GAATCATCATTGTGCTGTTGTACCA
LOC_Os12g37920
OsAffx.32075.1.S1_at--997--31Chr12:23269652..23269676 (25 bp)
ATTGTGCTGTTGTACCATTCTTCTG
LOC_Os12g37920
OsAffx.32075.1.S1_at--577--8811Chr12:23269645..23269669 (25 bp)
TGTTGTACCATTCTTCTGCAGTTAT
LOC_Os12g37920
OsAffx.32075.1.S1_at--1142--6971Chr12:23269641..23269665 (25 bp)
GTACCATTCTTCTGCAGTTATGCTT
LOC_Os12g37920
OsAffx.32075.1.S1_at--1109--112Chr12:23269636..23269660 (25 bp)
ATTCTTCTGCAGTTATGCTTGCCAT
LOC_Os12g37920
OsAffx.32075.1.S1_at--547--5032Chr12:23275235..23275294 (25 bp)
GCAGTTATGCTTGCCATTGTCCAAT
LOC_Os12g37939
OsAffx.32075.1.S1_at--422--4311Chr12:23269580..23269639 (25 bp)
CCATTGTCCAATGGGTGGATTGCTT
LOC_Os12g37920
OsAffx.32075.1.S1_at--245--7451Chr12:23269506..23269530 (25 bp)
GTGTCTTACATACACAGTTAAGCGC
LOC_Os12g37920
OsAffx.32075.1.S1_at--1054--10471Chr12:23269501..23269525 (25 bp)
TTACATACACAGTTAAGCGCATTAC
LOC_Os12g37920
Target Sequence 
TTCTTTTTTACAGGTTTGGCTTCATGAATCATCATTGTGCTGTTGTACCATTCTTCTGCAGTTATGCTTGCCATTGTCCA
ATGGGTGGATTGCTTGGTGCGGCAGTTCCACTGTTTATAGGTGCTTTATGGGGTGTTGGTGATGGTGTCTTACATACACA
GTTAAGCGCATTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32075.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis