Browse Element(s) Details


Os.11638.1.S1_at

Description gb:AK107214.1
DB_XREF= gi:32992423
TID=Os.11638.1
CNT=23
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.11638 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-125-C06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-125-C06, full insert sequence.
FL= gb:AK107214.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3797011/11myb family transcription factor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g37920OsAffx.32075.1.S1_at11/1112+23269146..23272653expressed protein
LOC_Os12g37920Os.56047.1.S1_at3/1112+23269146..23272653expressed protein
LOC_Os12g37939Os.56047.1.S1_at11/1112+23274368..23281948UNC93 homolog A, putative, expressed
LOC_Os12g37939OsAffx.7824.1.S1_s_at10/1112+23274368..23281948UNC93 homolog A, putative, expressed
LOC_Os12g37939Os.37965.1.S1_at9/1112+23274368..23281948UNC93 homolog A, putative, expressed
LOC_Os12g37939OsAffx.32075.1.S1_at2/1112+23274368..23281948UNC93 homolog A, putative, expressed
LOC_Os12g37960Os.21433.1.S1_at11/1112+23284584..23289908Diaminopimelate epimerase, putative, expressed
LOC_Os12g37970Os.11638.1.S1_at11/1112+23292073..23293502myb family transcription factor, putative, expressed
LOC_Os12g37980OsAffx.32076.1.S1_x_at11/1112+23304643..23311305Protein kinase domain containing protein
LOC_Os12g37980OsAffx.32076.1.S1_at11/1112+23304643..23311305Protein kinase domain containing protein
LOC_Os12g37990NANA12+23315183..23315962hypothetical protein
LOC_Os12g38000Os.11297.1.S1_at11/1112+23316456..2331830460S ribosomal protein L2, putative, expressed
LOC_Os12g38000OsAffx.3064.1.S1_at1/1112+23316456..2331830460S ribosomal protein L2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11638.1.S1_at--204--1391Chr12:23292656..23292680 (25 bp)
AGACCCCGTCAATGATCATTGGAAT
LOC_Os12g37970
Os.11638.1.S1_at--119--5031Chr12:23292608..23292632 (25 bp)
GCAGTGGCTGCATCACAAGCATCAT
LOC_Os12g37970
Os.11638.1.S1_at--556--1531Chr12:23292591..23292615 (25 bp)
AGCATCATGAAAAGCACCCCTGTTG
LOC_Os12g37970
Os.11638.1.S1_at--301--10771Chr12:23292527..23292551 (25 bp)
TTGAGGCACCAAATGTGCTCCCAGG
LOC_Os12g37970
Os.11638.1.S1_at--720--4791Chr12:23292511..23292535 (25 bp)
GCTCCCAGGGCCATGTTTTGATGAA
LOC_Os12g37970
Os.11638.1.S1_at--958--271Chr12:23292479..23292503 (25 bp)
ATAGTGCATCCAATAGCCTATCTGG
LOC_Os12g37970
Os.11638.1.S1_at--1066--7731Chr12:23292352..23292376 (25 bp)
GGTGGGCCCATGTTATTGAAGCAAT
LOC_Os12g37970
Os.11638.1.S1_at--453--2831Chr12:23292308..23292332 (25 bp)
AAGTTAATTATCCACCTAGCAGAAG
LOC_Os12g37970
Os.11638.1.S1_at--71--10751Chr12:23292224..23292248 (25 bp)
TTGCAAGTGTGCTCATGTTTCATGT
LOC_Os12g37970
Os.11638.1.S1_at--890--9011Chr12:23292147..23292171 (25 bp)
TGCAAGTGGGCAAGGCACTCTGTAT
LOC_Os12g37970
Os.11638.1.S1_at--151--2651Chr12:23292113..23292137 (25 bp)
AACCAGCTATCTCCTTAGCGACTTT
LOC_Os12g37970
Target Sequence 
AGACCCCGTCAATGATCATTGGAATTGAGGAGCAGGAACTTCATGGCGGCAGTGGCTGCATCACAAGCATCATGAAAAGC
ACCCCTGTTGACATGGATGGNTATCCCATGGATCAGATATGGATGGAAATTGAGGCACCAAATGTGCTCCCAGGGCCATG
TTTTGATGAAGCAAAGGATAGTGCATCCAATAGCCTATCTGGNCCTNTATTGCCATATCCTATGTGGGATTACTATTGCC
CANAAACATGCTTGAGGATGGATGATGAGATCAAGGTAGCACCACAATTTGGTTATGGTAAAGGGGTGGGCCCATGTTAT
TGAAGCAATATATTGAACTAGGTTACCCAAGTTAATTATCCACCTAGCAGAAGTGAAGTGCTTTTGTAGAAGAATCATTA
GCATGGATCTAAATATTTACAGCTATGTAACATTGCAAGTGTGCTCATGTTTCATGTATNTAGCTAGTGTGCAAGATAGC
TTTTGCCNCTTGGTCCTTGATGTATGCAATGCAAGTGGGCAAGGCACTCTGTATTCACAATNCAACCAGCTATCTCCTTA
GCGACTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11638.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis