Browse Element(s) Details


Os.21433.1.S1_at

Description gb:CB680362
DB_XREF= gi:29684087
DB_XREF=OSJNEf04O17.r
CLONE=OSJNEf04O17
TID=Os.21433.1
CNT=14
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.21433 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein pir:T45898 (A.thaliana) T45898 diaminopimelate epimerase-like protein - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3796011/11Diaminopimelate epimerase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g37900NANA12+23259935..23260482expressed protein
LOC_Os12g37910Os.14915.1.S1_a_at11/1112+23261363..23265644GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os12g37920OsAffx.32075.1.S1_at11/1112+23269146..23272653expressed protein
LOC_Os12g37920Os.56047.1.S1_at3/1112+23269146..23272653expressed protein
LOC_Os12g37939Os.56047.1.S1_at11/1112+23274368..23281948UNC93 homolog A, putative, expressed
LOC_Os12g37939OsAffx.7824.1.S1_s_at10/1112+23274368..23281948UNC93 homolog A, putative, expressed
LOC_Os12g37939Os.37965.1.S1_at9/1112+23274368..23281948UNC93 homolog A, putative, expressed
LOC_Os12g37939OsAffx.32075.1.S1_at2/1112+23274368..23281948UNC93 homolog A, putative, expressed
LOC_Os12g37960Os.21433.1.S1_at11/1112+23284584..23289908Diaminopimelate epimerase, putative, expressed
LOC_Os12g37970Os.11638.1.S1_at11/1112+23292073..23293502myb family transcription factor, putative, expressed
LOC_Os12g37980OsAffx.32076.1.S1_x_at11/1112+23304643..23311305Protein kinase domain containing protein
LOC_Os12g37980OsAffx.32076.1.S1_at11/1112+23304643..23311305Protein kinase domain containing protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0008837molecular_functiondiaminopimelate epimerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21433.1.S1_at--468--10051Chr12:23288406..23288430 (25 bp)
TAGTTGATTTGCCTGGTGGACCATT
LOC_Os12g37960
Os.21433.1.S1_at--1086--10471Chr12:23288464..23288488 (25 bp)
TTACATGACTGGTCCTGCAGAGGCT
LOC_Os12g37960
Os.21433.1.S1_at--760--831Chr12:23288496..23288517 (22 bp)
ATGGATCTGCTGTTCACTAGGTACC
LOC_Os12g37960
Os.21433.1.S1_at--706--6811Chr12:23289478..23289502 (25 bp)
GTTTACCGCAACTGGGAGCCTGAGA
LOC_Os12g37960
Os.21433.1.S1_at--567--8611Chr12:23289527..23289551 (25 bp)
TGGTGTTTTGGTACCAGCACAACCC
LOC_Os12g37960
Os.21433.1.S1_at--241--3631Chr12:23289554..23289578 (25 bp)
CTTGATTCTTAATTGCGCCTGTGGC
LOC_Os12g37960
Os.21433.1.S1_at--840--3891Chr12:23289572..23289596 (25 bp)
CTGTGGCCTGCTTACTATGGGCAGA
LOC_Os12g37960
Os.21433.1.S1_at--501--2271Chr12:23289631..23289655 (25 bp)
AAATCTTTTCTGCTTCTTTAGTTTG
LOC_Os12g37960
Os.21433.1.S1_at--579--5811Chr12:23289706..23289730 (25 bp)
TCCTTCCTTTGGCAATAAACCCTTG
LOC_Os12g37960
Os.21433.1.S1_at--870--2371Chr12:23289722..23289746 (25 bp)
AAACCCTTGCTGTCTTAAGTGCATA
LOC_Os12g37960
Os.21433.1.S1_at--1039--2791Chr12:23289825..23289849 (25 bp)
AAGATGGTTGTTGCCTGCTCCCAGG
LOC_Os12g37960
Target Sequence 
TAGTTGATTTGCCTGGTGGACCATTGGAAATCGAATGGAGGGAGGATGACAATCATATTTACATGACTGGTCCTGCAGAG
GCTGTCTTCTATGGATCTGCTGTTCACTAGGTACCAGGGACCAAGCTGGAAAAGTTTACCGCAACTGGGAGCCTGAGAGA
TTGAGTATAAGGTCTATCAAATTGGTGTTTTGGTACCAGCACAACCCCTCTTGATTCTTAATTGCGCCTGTGGCCTGCTT
ACTATGGGCAGAATTACGGGGTTCTTTCAAACAAATCTACTATTTTAAATCTTTTCTGCTTCTTTAGTTTGTCAGGTTTG
AACCCTATATTGGTAGTAAATCTCTCCTACTTTTTTTTTGTTCCTTCCTTTGGCAATAAACCCTTGCTGTCTTAAGTGCA
TAACTGCATGTGCATTTGAGTTTTTTGTCTACAGATATCCTGATTTACTACAGAATGATTGAGCATGTGTGTTATTTGGC
AAGATGGTTGTTGCCTGCTCCCAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21433.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis