Browse Element(s) Details


Os.11297.1.S1_at

Description gb:AK070647.1
DB_XREF= gi:32980671
TID=Os.11297.1
CNT=53
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11297 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-040-E03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023063F19, full insert sequence.
FL= gb:AK104806.1 gb:AK070647.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3800011/1160S ribosomal protein L2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g37970Os.11638.1.S1_at11/1112+23292073..23293502myb family transcription factor, putative, expressed
LOC_Os12g37980OsAffx.32076.1.S1_x_at11/1112+23304643..23311305Protein kinase domain containing protein
LOC_Os12g37980OsAffx.32076.1.S1_at11/1112+23304643..23311305Protein kinase domain containing protein
LOC_Os12g37990NANA12+23315183..23315962hypothetical protein
LOC_Os12g38000Os.11297.1.S1_at11/1112+23316456..2331830460S ribosomal protein L2, putative, expressed
LOC_Os12g38000OsAffx.3064.1.S1_at1/1112+23316456..2331830460S ribosomal protein L2, putative, expressed
LOC_Os12g38010OsAffx.7826.2.S1_at11/1112+23318668..23319649Metallothionein-like protein 1, putative, expressed
LOC_Os12g38020OsAffx.22641.1.S1_at8/1112+23321375..23326043retrotransposon protein, putative, unclassified
LOC_Os12g38030OsAffx.22848.4.S1_at2/1112+23332989..23338947retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g38030OsAffx.22848.4.S1_x_at1/1112+23332989..23338947retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g38040Os.54670.1.S1_at10/1112+23342823..23345765Zinc knuckle family protein, expressed
LOC_Os12g38040Os.9279.1.S1_at1/1112+23342823..23345765Zinc knuckle family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0000311cellular_componentplastid large ribosomal subunit
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11297.1.S1_at--500--7771Chr12:23317735..23317759 (25 bp)
GGTGCCAAGAAGATTGTCCCCAGCA
LOC_Os12g38000
Os.11297.1.S1_at--13--8351Chr12:23317821..23317845 (25 bp)
GGCTGGAAACGCCTACCACAAGTAC
LOC_Os12g38000
Os.11297.1.S1_at--999--10731Chr12:23317898..23317922 (25 bp)
TTGAGCATCCCCACGGAGGAGGTAA
LOC_Os12g38000
Os.11297.1.S1_at--312--1471Chr12:23317976..23318000 (25 bp)
AGAAGGTTGGTCTCATCGCTGCAAG
LOC_Os12g38000
Os.11297.1.S1_at--290--9351Chr12:23317991..23318015 (25 bp)
TCGCTGCAAGGAGGACTGGTCGTCT
LOC_Os12g38000
Os.11297.1.S1_at--257--10711Chr12:23318079..23318103 (25 bp)
TTGCTACTATCCATATTCGCTACCA
LOC_Os12g38000
Os.11297.1.S1_at--754--4851Chr12:23318097..23318121 (25 bp)
GCTACCATGCTTATCATCGCTAGAT
LOC_Os12g38000
Os.11297.1.S1_at--628--10111Chr12:23318141..23318165 (25 bp)
TATGGTCGTGCTTTTTGCTTGGTAC
LOC_Os12g38000
Os.11297.1.S1_at--410--3611Chr12:23318158..23318182 (25 bp)
CTTGGTACTCTGGTCACATTTGTGA
LOC_Os12g38000
Os.11297.1.S1_at--363--5271Chr12:23318184..23318208 (25 bp)
GAATGTTCGCAGTTTTCGTGGTCAT
LOC_Os12g38000
Os.11297.1.S1_at--131--9431Chr12:23318199..23318223 (25 bp)
TCGTGGTCATGGTCTGGATTCTACA
LOC_Os12g38000
Target Sequence 
GGTGCCAAGAAGATTGTCCCCAGCAGCTGCCGTGCCATGATCGGTCAGGTTGCTGGTGGTGGCAGGACTGAGAAGCCGAT
GCTCAAGGCTGGAAACGCCTACCACAAGTACCGCGTGAAGAGGAACTGCTGGCCTAAGGTGCGTGGTGTGGCCATGAACC
CCGTTGAGCATCCCCACGGAGGAGGTAACCACCAGCACATTGGTCACGCCTCCACCGTCCGCCGTGATGCACCTCCTGGC
CAGAAGGTTGGTCTCATCGCTGCAAGGAGGACTGGTCGTCTCAGAGGCCAGGCCGCCGCTACCGCTGCCAAGGCCGACAA
GGCCACTTAGAGTGTTACTTATTGTTGCTACTATCCATATTCGCTACCATGCTTATCATCGCTAGATTAAAGGACATGTA
TTCCAGTATGGTCGTGCTTTTTGCTTGGTACTCTGGTCACATTTGTGATGAATGTTCGCAGTTTTCGTGGTCATGGTCTG
GATTCTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11297.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis