Browse Element(s) Details


OsAffx.7826.2.S1_at

Description tigr:9640.m03694
TID=OsAffx.7826.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to plant metallothionein-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3801011/11Metallothionein-like protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g37980OsAffx.32076.1.S1_x_at11/1112+23304643..23311305Protein kinase domain containing protein
LOC_Os12g37980OsAffx.32076.1.S1_at11/1112+23304643..23311305Protein kinase domain containing protein
LOC_Os12g37990NANA12+23315183..23315962hypothetical protein
LOC_Os12g38000Os.11297.1.S1_at11/1112+23316456..2331830460S ribosomal protein L2, putative, expressed
LOC_Os12g38000OsAffx.3064.1.S1_at1/1112+23316456..2331830460S ribosomal protein L2, putative, expressed
LOC_Os12g38010OsAffx.7826.2.S1_at11/1112+23318668..23319649Metallothionein-like protein 1, putative, expressed
LOC_Os12g38020OsAffx.22641.1.S1_at8/1112+23321375..23326043retrotransposon protein, putative, unclassified
LOC_Os12g38030OsAffx.22848.4.S1_at2/1112+23332989..23338947retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g38030OsAffx.22848.4.S1_x_at1/1112+23332989..23338947retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g38040Os.54670.1.S1_at10/1112+23342823..23345765Zinc knuckle family protein, expressed
LOC_Os12g38040Os.9279.1.S1_at1/1112+23342823..23345765Zinc knuckle family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006878biological_processcopper ion homeostasis
GO:0005507molecular_functioncopper ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7826.2.S1_at--207--151Chr12:23318948..23318972 (25 bp)
ATTTGAGGGAGTTGGCAAAGCAGCT
LOC_Os12g38010
OsAffx.7826.2.S1_at--40--891Chr12:23318854..23318878 (25 bp)
AGGCCAAGGCGATCTGTGACTATGT
LOC_Os12g38010
OsAffx.7826.2.S1_at--66--6412Chr04:30977883..30977926 (24 bp)
GATCTGTGACTATGTGATGAACAAA
NONE
OsAffx.7826.2.S1_at--73--6291Chr12:23318829..23318853 (25 bp)
GATGAACAAACAGAGCCCTTCCAGT
LOC_Os12g38010
OsAffx.7826.2.S1_at--9--2391Chr12:23318822..23318846 (25 bp)
AAACAGAGCCCTTCCAGTCTGATGG
LOC_Os12g38010
OsAffx.7826.2.S1_at--1093--10671Chr12:23318811..23318835 (25 bp)
TTCCAGTCTGATGGCTCATGGCTGT
LOC_Os12g38010
OsAffx.7826.2.S1_at--669--4811Chr12:23318798..23318822 (25 bp)
GCTCATGGCTGTGTGACCCTGTGAA
LOC_Os12g38010
OsAffx.7826.2.S1_at--1144--7451Chr12:23318788..23318812 (25 bp)
GTGTGACCCTGTGAATCCAGCATTG
LOC_Os12g38010
OsAffx.7826.2.S1_at--713--3032Chr12:23318775..23318799 (25 bp)
AATCCAGCATTGTGTGTGCGCGCGC
LOC_Os12g38010
OsAffx.7826.2.S1_at--1131--2351Chr12:23318719..23318743 (25 bp)
AAACCAAGTGGTTTCTGGCAATATG
LOC_Os12g38010
OsAffx.7826.2.S1_at--284--3911Chr12:23318705..23318729 (25 bp)
CTGGCAATATGTGTTGTACCGCTTG
LOC_Os12g38010
Target Sequence 
ATTTGAGGGAGTTGGCAAAGCAGCTGAATCTGGTGAGGGTGCCCATGGCTGCAGCTGTGGTTCCAGCTGCAAGTGCAACC
CCTGCAACTGCTAAAGGCCAAGGCGATCTGTGACTATGTGATGAACAAACAGAGCCCTTCCAGTCTGATGGCTCATGGCT
GTGTGACCCTGTGAATCCAGCATTGTGTGTGCGCGCGCGCGTCATGAATTGTCAAAAATTATGGCTGGAAAACCAAGTGG
TTTCTGGCAATATGTGTTGTACCGCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7826.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis