Browse Element(s) Details


Os.9279.1.S1_at

Description gb:AK103445.1
DB_XREF= gi:32988654
TID=Os.9279.1
CNT=24
FEA=FLmRNA
TIER=FL+Stack
STK=9
UG=Os.9279 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033129F19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033129F19, full insert sequence.
FL= gb:AK103445.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3827011/11Metallothionein-like protein 1, putative, expressed
LOC_Os12g380401/11Zinc knuckle family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g38220NANA12+23449664..23449939hypothetical protein
LOC_Os12g38230Os.55662.1.S1_at11/1112+23451269..23452144expressed protein
LOC_Os12g38240NANA12+23456530..23457593transposon protein, putative, unclassified
LOC_Os12g38250OsAffx.7830.1.S1_at11/1112+23458352..23459049expressed protein
LOC_Os12g38260Os.53836.1.S1_at11/1112+23460907..23465702expressed protein
LOC_Os12g38270Os.9279.1.S1_at11/1112+23467876..23468826Metallothionein-like protein 1, putative, expressed
LOC_Os12g38280Os.27639.1.S1_x_at3/1112+23470534..23477041retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g38280Os.53731.1.S1_at2/1112+23470534..23477041retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g38290OsAffx.32080.1.S1_at11/1112+23478959..23479866Metallothionein-like protein 1, putative, expressed
LOC_Os12g38290Os.17004.1.S1_at1/1112+23478959..23479866Metallothionein-like protein 1, putative, expressed
LOC_Os12g38300Os.37783.1.S1_a_at11/1112+23481533..23482492Metallothionein-like protein 1, putative, expressed
LOC_Os12g38300Os.37783.2.S1_x_at3/1112+23481533..23482492Metallothionein-like protein 1, putative, expressed
LOC_Os12g38310Os.2313.1.S1_at10/1112+23483112..23484957Mitochondrial import inner membrane translocase subunit Tim9, putative, expressed
LOC_Os12g38320Os.56976.1.S1_at11/1112+23486429..23487681expressed protein
LOC_Os12g38330NANA12+23490722..23491093expressed protein
LOC_Os12g38340Os.50144.1.S1_at11/1112+23492984..23493616expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006878biological_processcopper ion homeostasis
GO:0005507molecular_functioncopper ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9279.1.S1_at--600--3771Chr12:23467912..23467936 (25 bp)
CTCTCTTTGCACTACATTCTTGAAT
LOC_Os12g38270
Os.9279.1.S1_at--8--10731Chr12:23467968..23467992 (25 bp)
TTGCTGCGGAGGAAGCTGCAACTGT
LOC_Os12g38270
Os.9279.1.S1_at--1019--1591Chr12:23467981..23468005 (25 bp)
AGCTGCAACTGTGGCTCTAGCTGCA
LOC_Os12g38270
Os.9279.1.S1_at--136--4192Chr12:23468265..23468289 (25 bp)
CCCTGACCTGGCAGAGAAGACCACA
LOC_Os12g38270
Os.9279.1.S1_at--474--2411Chr12:23468289..23468313 (25 bp)
AAACACTTCAGCAACTATGGTCCTC
LOC_Os12g38270
Os.9279.1.S1_at--221--7231Chr12:23468317..23468447 (25 bp)
GTCGCACCTGCGAAGGAGCAATTTG
LOC_Os12g38270
Os.9279.1.S1_at--660--211Chr12:23468594..23468618 (25 bp)
ATTTGATGCAATGGCTCCTGTGTGT
LOC_Os12g38270
Os.9279.1.S1_at--611--7391Chr12:23468635..23468659 (25 bp)
GTGAGTCAGCTTGTGTTCTTCATCC
LOC_Os12g38270
Os.9279.1.S1_at--25--231Chr12:23468683..23468707 (25 bp)
ATATTGTGAGGTGTCTCCTGCTTTA
LOC_Os12g38270
Os.9279.1.S1_at--629--411Chr12:23468740..23468764 (25 bp)
ATCATGGCCTTGTGATTGGAGCACC
LOC_Os12g38270
Os.9279.1.S1_at--730--8071Chr12:23468757..23468781 (25 bp)
GGAGCACCTGAAGTTTTTACAGACA
LOC_Os12g38270
Target Sequence 
CTCTCTTTGCACTACATTCTTGAATTCACAACCTACAAACAATCCAAGAAGATGTCTTGCTGCGGAGGAAGCTGCAACTG
TGGCTCTAGCTGCAAGTGCGGCAGCGGCTGCGGAAACATGTACCCTGACCTGGCAGAGAAGACCACAAACACTTCAGCAA
CTATGGTCCTCGGGGTCGCACCTGCGAAGGAGCAATTTGAGGGGGTTGGCAAGGCAGCAGAGTCTGGTGAGGCTGCCCAT
GGCTGCAGCTGTGGCTCCAGCTGCAAATGCAATCCCTGCAACTGCTAAAGGAGATGGTGATCTGCATCAGCATGCTGATG
ATATGTACAAGTAAATAAAGAAGCCATTTGATGCAATGGCTCCTGTGTGTGTGTGTGTGCGACAGTGTGAGTCAGCTTGT
GTTCTTCATCCTGATGTACTAATGTGGCCTGTGAATATTGTGAGGTGTCTCCTGCTTTACTCTCTTGTCAGAATGTAATT
AGAGGCTATATATCATGGCCTTGTGATTGGAGCACCTGAAGTTTTTACAGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9279.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis