Browse Element(s) Details


Os.50144.1.S1_at

Description gb:AK119942.1
DB_XREF= gi:37989565
TID=Os.50144.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50144 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-184-B08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-184-B08, full insert sequence.
FL= gb:AK119942.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3834011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g38270Os.9279.1.S1_at11/1112+23467876..23468826Metallothionein-like protein 1, putative, expressed
LOC_Os12g38280Os.27639.1.S1_x_at3/1112+23470534..23477041retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g38280Os.53731.1.S1_at2/1112+23470534..23477041retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g38290OsAffx.32080.1.S1_at11/1112+23478959..23479866Metallothionein-like protein 1, putative, expressed
LOC_Os12g38290Os.17004.1.S1_at1/1112+23478959..23479866Metallothionein-like protein 1, putative, expressed
LOC_Os12g38300Os.37783.1.S1_a_at11/1112+23481533..23482492Metallothionein-like protein 1, putative, expressed
LOC_Os12g38300Os.37783.2.S1_x_at3/1112+23481533..23482492Metallothionein-like protein 1, putative, expressed
LOC_Os12g38310Os.2313.1.S1_at10/1112+23483112..23484957Mitochondrial import inner membrane translocase subunit Tim9, putative, expressed
LOC_Os12g38320Os.56976.1.S1_at11/1112+23486429..23487681expressed protein
LOC_Os12g38330NANA12+23490722..23491093expressed protein
LOC_Os12g38340Os.50144.1.S1_at11/1112+23492984..23493616expressed protein
LOC_Os12g38350NANA12+23496846..23497298expressed protein
LOC_Os12g38360Os.5757.1.S1_at10/1112+23499024..23499651expressed protein
LOC_Os12g38370OsAffx.32082.1.S1_at11/1112+23505656..23506057expressed protein
LOC_Os12g38380Os.18703.1.S1_at11/1112+23511836..23520923Suppressor of forked protein containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50144.1.S1_at--129--1191Chr12:23493017..23493041 (25 bp)
AGTACGGTGTATTGCCGCTCTTCGT
LOC_Os12g38340
Os.50144.1.S1_at--785--9411Chr12:23493044..23493068 (25 bp)
TCGTCGCCGGCGTACTCATTGTCGC
LOC_Os12g38340
Os.50144.1.S1_at--1123--4151Chr12:23493075..23493099 (25 bp)
CGCCGGGACAGCTACGGACGACGCT
LOC_Os12g38340
Os.50144.1.S1_at--779--9131Chr12:23493153..23493177 (25 bp)
TGCGGCGCTGATGGATCACGATCAT
LOC_Os12g38340
Os.50144.1.S1_at--668--9271Chr12:23493266..23493290 (25 bp)
TCCGAGCAAGGCGACACTACGGCGG
LOC_Os12g38340
Os.50144.1.S1_at--1123--4491Chr12:23493445..23493469 (25 bp)
GCCGTATACGCGACACATCGGTGAT
LOC_Os12g38340
Os.50144.1.S1_at--1112--8351Chr12:23493484..23493508 (25 bp)
GGCGGTGGTGCAAATTAACGTATGT
LOC_Os12g38340
Os.50144.1.S1_at--859--7031Chr12:23493528..23493552 (25 bp)
GTAATTAATTAATCTACTCCTGTTG
LOC_Os12g38340
Os.50144.1.S1_at--578--5811Chr12:23493540..23493564 (25 bp)
TCTACTCCTGTTGTTTAAAGGGCGT
LOC_Os12g38340
Os.50144.1.S1_at--165--1091Chr12:23493558..23493582 (25 bp)
AGGGCGTAGTACTAGATCTCTCTCC
LOC_Os12g38340
Os.50144.1.S1_at--811--6411Chr12:23493572..23493596 (25 bp)
GATCTCTCTCCCGTCTAAGAATAAA
LOC_Os12g38340
Target Sequence 
AGTACGGTGTATTGCCGCTCTTCGTCCTCGTCGCCGGCGTACTCATTGTCGCCGCCGGCGCCGGGACAGCTACGGACGAC
GCTGCTGGCCGCCGCCACTGCCGCGTGGTCGGCGTCGACGACGACGTCGACGTGGCTGCGGCGCTGATGGATCACGATCA
TCATCCCCAGCGGCGGCGGCGGCTGGAGGATGAGGTGGTGGTGGAAACGGAGCTCCCGGTGGTCGACGGCGGCGGCGGCG
GCCTCGCCGTCCGAGCAAGGCGACACTACGGCGGCGGCGGCGGCTTCTCCTACGGCTGCCTCAGCCGGGCGAGGCCGGCG
TGCCCGCGCGCCGGCGGGTGCGCCGCCAGAGGGCGGCCCTACACACGGCCGTGCACGTACGGCAACCGCTGCGGCCACCG
CCGGCCGTGATCGATCGATCCGGCCGCCGCCGTATACGCGACACATCGGTGATGATGACGGTAAACCGGCGGTGGTGCAA
ATTAACGTATGTACTTGCATTTGCTAATGCAGTAATTAATTAATCTACTCCTGTTGTTTAAAGGGCGTAGTACTAGATCT
CTCTCCCGTCTAAGAATAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50144.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis