Browse Element(s) Details


Os.18703.1.S1_at

Description gb:AK102914.1
DB_XREF= gi:32988123
TID=Os.18703.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.18703 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033113M06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033113M06, full insert sequence.
FL= gb:AK102914.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3838011/11Suppressor of forked protein containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g38320Os.56976.1.S1_at11/1112+23486429..23487681expressed protein
LOC_Os12g38330NANA12+23490722..23491093expressed protein
LOC_Os12g38340Os.50144.1.S1_at11/1112+23492984..23493616expressed protein
LOC_Os12g38350NANA12+23496846..23497298expressed protein
LOC_Os12g38360Os.5757.1.S1_at10/1112+23499024..23499651expressed protein
LOC_Os12g38370OsAffx.32082.1.S1_at11/1112+23505656..23506057expressed protein
LOC_Os12g38380Os.18703.1.S1_at11/1112+23511836..23520923Suppressor of forked protein containing protein, expressed
LOC_Os12g38400Os.52643.1.S1_at11/1112+23521438..23527003Myb-like DNA-binding domain containing protein, expressed
LOC_Os12g38400Os.12994.1.S1_at11/1112+23521438..23527003Myb-like DNA-binding domain containing protein, expressed
LOC_Os12g38390OsAffx.20010.1.S1_at10/1112+23526583..23527355hypothetical protein
LOC_Os12g38410OsAffx.32083.3.S1_x_at11/1112+23542601..23546356hypothetical protein
LOC_Os12g38410OsAffx.32083.1.S1_x_at9/1112+23542601..23546356hypothetical protein
LOC_Os12g38410OsAffx.32083.1.S1_at6/1112+23542601..23546356hypothetical protein
LOC_Os12g38410OsAffx.32083.2.S1_x_at2/1112+23542601..23546356hypothetical protein
LOC_Os12g38410OsAffx.32083.4.S1_x_at1/1112+23542601..23546356hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006396biological_processRNA processing
GO:0006397biological_processmRNA processing
GO:0005622cellular_componentintracellular
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18703.1.S1_at--664--5611Chr12:23520250..23520274 (25 bp)
GACAAACCAGGTTCGCAAGTTCCTG
LOC_Os12g38380
Os.18703.1.S1_at--173--2831Chr12:23520266..23520290 (25 bp)
AAGTTCCTGGTCCTGCCACGAGTGA
LOC_Os12g38380
Os.18703.1.S1_at--405--6371Chr12:23520329..23520353 (25 bp)
GATCCATCCATAGACCTCCAAGAGA
LOC_Os12g38380
Os.18703.1.S1_at--846--5751Chr12:23520352..23520376 (25 bp)
GACGGGCAACCCACGAAGCGGAAGA
LOC_Os12g38380
Os.18703.1.S1_at--248--6491Chr12:23520520..23520544 (25 bp)
GATACGTCGACAACAGTGCAGAGCC
LOC_Os12g38380
Os.18703.1.S1_at--92--1971Chr12:23520627..23520651 (25 bp)
ACTGTCCAGTGGAAGTGTGTTCTCT
LOC_Os12g38380
Os.18703.1.S1_at--142--7431Chr12:23520643..23520667 (25 bp)
GTGTTCTCTGGAGATCAGTCAGCCA
LOC_Os12g38380
Os.18703.1.S1_at--134--7111Chr12:23520660..23520684 (25 bp)
GTCAGCCAGCTCAGGCTAGTTCAAA
LOC_Os12g38380
Os.18703.1.S1_at--697--751Chr12:23520696..23520720 (25 bp)
ATGTAGCGTCATATATCCTGATAGG
LOC_Os12g38380
Os.18703.1.S1_at--203--1051Chr12:23520718..23520742 (25 bp)
AGGGTTCTACTACAATTCTATTATA
LOC_Os12g38380
Os.18703.1.S1_at--513--6291Chr12:23520822..23520846 (25 bp)
GATGTTGGCGCGTAAATGTGTTTGT
LOC_Os12g38380
Target Sequence 
GACAAACCAGGTTCGCAAGTTCCTGGTCCTGCCACGAGTGACCTCTCAGGTCCTGGCAAATCAGGATTGAACCAGAATGG
ATCCATCCATAGACCTCCAAGAGACGGGCAACCCACGAAGCGGAAGAACTCTGAAAGGGGGCGAGCACAAGAGGAGGATG
ATACGTCGACAACAGTGCAGAGCCGAGCAATGCCNGCGGGACATATTCNAGGCTTAGGCAGATCCAGAGGAACCGCGGGT
TGGGCCCTTCCCAGTCAGGATCNAGCGGCACTGTCCAGTGGAAGTGTGTTCTCTGGAGATCAGTCAGCCAGCTCAGGCTA
GTTCAAATTTACAATTCTATGTAGCGTCATATATCCTGATAGGGTTCTACTACAATTCTATTATAGAGTATAATTCATAT
CTAGGTAGGGTCTAGTTTAGTTAGGTCCCCCCCTGATGAAAGATGTATGCATAATTGCATGAGTGATGTTGGCGCGTAAA
TGTGTTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18703.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis