Browse Element(s) Details


OsAffx.20010.1.S1_at

Description tigr:9640.m03733
TID=OsAffx.20010.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3839010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g38370OsAffx.32082.1.S1_at11/1112+23505656..23506057expressed protein
LOC_Os12g38380Os.18703.1.S1_at11/1112+23511836..23520923Suppressor of forked protein containing protein, expressed
LOC_Os12g38400Os.52643.1.S1_at11/1112+23521438..23527003Myb-like DNA-binding domain containing protein, expressed
LOC_Os12g38400Os.12994.1.S1_at11/1112+23521438..23527003Myb-like DNA-binding domain containing protein, expressed
LOC_Os12g38390OsAffx.20010.1.S1_at10/1112+23526583..23527355hypothetical protein
LOC_Os12g38410OsAffx.32083.3.S1_x_at11/1112+23542601..23546356hypothetical protein
LOC_Os12g38410OsAffx.32083.1.S1_x_at9/1112+23542601..23546356hypothetical protein
LOC_Os12g38410OsAffx.32083.1.S1_at6/1112+23542601..23546356hypothetical protein
LOC_Os12g38410OsAffx.32083.2.S1_x_at2/1112+23542601..23546356hypothetical protein
LOC_Os12g38410OsAffx.32083.4.S1_x_at1/1112+23542601..23546356hypothetical protein
LOC_Os12g38420Os.6211.1.S1_at11/1112+23550623..23551541expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20010.1.S1_at--832--5311Chr12:23526640..23526664 (25 bp)
GAAGGTAGTAGGATTCACTTACAGA
LOC_Os12g38390
OsAffx.20010.1.S1_at--333--6931Chr12:23526647..23526671 (25 bp)
GTAGGATTCACTTACAGAAACGCCA
LOC_Os12g38390
OsAffx.20010.1.S1_at--212--9871Chr12:23526659..23526683 (25 bp)
TACAGAAACGCCACTGCACCATCCT
LOC_Os12g38390
OsAffx.20010.1.S1_at--650--9071Chr12:23526686..23526710 (25 bp)
TGCTCTGTTCTTGGACCTCCCTGGA
LOC_Os12g38390
OsAffx.20010.1.S1_at--164--9591Chr12:23526694..23526718 (25 bp)
TCTTGGACCTCCCTGGAGCTCAAAA
LOC_Os12g38390
OsAffx.20010.1.S1_at--38--8551Chr12:23526707..23526731 (25 bp)
TGGAGCTCAAAACCCCAAATGATTT
LOC_Os12g38390
OsAffx.20010.1.S1_at--821--4811Chr12:23526711..23526735 (25 bp)
GCTCAAAACCCCAAATGATTTTAAG
LOC_Os12g38390
OsAffx.20010.1.S1_at--1155--5371Chr12:23526753..23526777 (25 bp)
GAAGAAGTCCCAAGAACACGAGCAG
LOC_Os12g38390
OsAffx.20010.1.S1_at--276--5331Chr12:23526756..23526779 (24 bp)
GAAGTCCCAAGAACACGAGCAGTGC
LOC_Os12g38390
OsAffx.20010.1.S1_at--148--7251Chr12:23526759..23526779 (21 bp)
GTCCCAAGAACACGAGCAGTGCAAT
LOC_Os12g38390
OsAffx.20010.1.S1_at--1091--2471NONE
AACACGAGCAGTGCAATGGATGTGA
NONE
Target Sequence 
GAAGGTAGTAGGATTCACTTACAGAAACGCCACTGCACCATCCTGCTGCTCTGTTCTTGGACCTCCCTGGAGCTCAAAAC
CCCAAATGATTTTAAGAACAAGAACAAGAAGAAGAAGAAGTCCCAAGAACACGAGCAGTGCAATGGATGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20010.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis