Browse Element(s) Details


OsAffx.32082.1.S1_at

Description tigr:9640.m03730
TID=OsAffx.32082.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3837011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g38300Os.37783.1.S1_a_at11/1112+23481533..23482492Metallothionein-like protein 1, putative, expressed
LOC_Os12g38300Os.37783.2.S1_x_at3/1112+23481533..23482492Metallothionein-like protein 1, putative, expressed
LOC_Os12g38310Os.2313.1.S1_at10/1112+23483112..23484957Mitochondrial import inner membrane translocase subunit Tim9, putative, expressed
LOC_Os12g38320Os.56976.1.S1_at11/1112+23486429..23487681expressed protein
LOC_Os12g38330NANA12+23490722..23491093expressed protein
LOC_Os12g38340Os.50144.1.S1_at11/1112+23492984..23493616expressed protein
LOC_Os12g38350NANA12+23496846..23497298expressed protein
LOC_Os12g38360Os.5757.1.S1_at10/1112+23499024..23499651expressed protein
LOC_Os12g38370OsAffx.32082.1.S1_at11/1112+23505656..23506057expressed protein
LOC_Os12g38380Os.18703.1.S1_at11/1112+23511836..23520923Suppressor of forked protein containing protein, expressed
LOC_Os12g38400Os.52643.1.S1_at11/1112+23521438..23527003Myb-like DNA-binding domain containing protein, expressed
LOC_Os12g38400Os.12994.1.S1_at11/1112+23521438..23527003Myb-like DNA-binding domain containing protein, expressed
LOC_Os12g38390OsAffx.20010.1.S1_at10/1112+23526583..23527355hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32082.1.S1_at--456--4151Chr12:23505687..23505711 (25 bp)
CGCGCGCTGTCGTGATCCTTGCGGC
LOC_Os12g38370
OsAffx.32082.1.S1_at--605--8711Chr12:23505694..23505718 (25 bp)
TGTCGTGATCCTTGCGGCGGCCCTC
LOC_Os12g38370
OsAffx.32082.1.S1_at--423--6211Chr12:23505746..23505770 (25 bp)
GAGGCTGCAGGCAACATGTACGCGT
LOC_Os12g38370
OsAffx.32082.1.S1_at--371--9031Chr12:23505751..23505775 (25 bp)
TGCAGGCAACATGTACGCGTCGTCT
LOC_Os12g38370
OsAffx.32082.1.S1_at--645--931Chr12:23505754..23505778 (25 bp)
AGGCAACATGTACGCGTCGTCTGCA
LOC_Os12g38370
OsAffx.32082.1.S1_at--306--751Chr12:23505761..23505785 (25 bp)
ATGTACGCGTCGTCTGCACGCGCGA
LOC_Os12g38370
OsAffx.32082.1.S1_at--594--431Chr12:23505799..23505823 (25 bp)
ATCTTGGGGATCATACGCCGGCGGC
LOC_Os12g38370
OsAffx.32082.1.S1_at--167--8251Chr12:23505921..23505945 (25 bp)
GGCACGGCTCGTATTTCGACGGGCT
LOC_Os12g38370
OsAffx.32082.1.S1_at--856--8311Chr12:23505926..23505950 (25 bp)
GGCTCGTATTTCGACGGGCTGAAGA
LOC_Os12g38370
OsAffx.32082.1.S1_at--262--8991Chr12:23505945..23505969 (25 bp)
TGAAGAGGGATCAGCCTTTCTGCCC
LOC_Os12g38370
OsAffx.32082.1.S1_at--530--1071Chr12:23505950..23505974 (25 bp)
AGGGATCAGCCTTTCTGCCCGCCGG
LOC_Os12g38370
Target Sequence 
CGCGCGCTGTCGTGATCCTTGCGGCGGCCCTCGCCGCCGCCGTCGCCACCGGCGGCGTGGAGGCTGCAGGCAACATGTAC
GCGTCGTCTGCACGCGCGACCACCACCTCATCATCTTGGGGATCATACGCCGGCGGCGCCATGCACGGCGCCGAAATGGC
GCTGGCGGCGGCGGCGGCGGTGGAGGACGAGGTGGCGCCGGAGTTCTTCCCGGTGGGCCTCGTCGTCGGCGACGGGCACG
GCTCGTATTTCGACGGGCTGAAGAGGGATCAGCCTTTCTGCCCGCCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32082.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis