Browse Element(s) Details


Os.37783.2.S1_x_at

Description gb:AU070898
DB_XREF= gi:5038788
DB_XREF=AU070898
CLONE=R10434_1A
TID=Os.37783.2
CNT=25
FEA=EST
TIER=Stack
STK=14
UG=Os.37783 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-110-E07, full insert sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3806411/11Metallothionein-like protein 1, putative, expressed
LOC_Os12g383003/11Metallothionein-like protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g38020OsAffx.22641.1.S1_at8/1112+23321375..23326043retrotransposon protein, putative, unclassified
LOC_Os12g38030OsAffx.22848.4.S1_at2/1112+23332989..23338947retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g38030OsAffx.22848.4.S1_x_at1/1112+23332989..23338947retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g38040Os.54670.1.S1_at10/1112+23342823..23345765Zinc knuckle family protein, expressed
LOC_Os12g38040Os.9279.1.S1_at1/1112+23342823..23345765Zinc knuckle family protein, expressed
LOC_Os12g38064Os.37783.2.S1_x_at11/1112+23349649..23357887Metallothionein-like protein 1, putative, expressed
LOC_Os12g38064OsAffx.7826.1.S1_at11/1112+23349649..23357887Metallothionein-like protein 1, putative, expressed
LOC_Os12g38064Os.37783.1.S1_a_at11/1112+23349649..23357887Metallothionein-like protein 1, putative, expressed
LOC_Os12g38064OsAffx.13220.1.S1_at1/1112+23349649..23357887Metallothionein-like protein 1, putative, expressed
LOC_Os12g38064OsAffx.4897.1.A1_at1/1112+23349649..23357887Metallothionein-like protein 1, putative, expressed
LOC_Os12g38090OsAffx.7828.1.S1_at11/1112+23360442..23361839F-box domain containing protein
LOC_Os12g38100OsAffx.7829.1.S1_at11/1112+23365498..23366323expressed protein
LOC_Os12g38110Os.3382.1.S1_at11/1112+23369158..23375239Importin-beta N-terminal domain containing protein, expressed
LOC_Os12g38110Os.47880.1.A1_at11/1112+23369158..23375239Importin-beta N-terminal domain containing protein, expressed
LOC_Os12g38110Os.22820.1.A1_at5/1112+23369158..23375239Importin-beta N-terminal domain containing protein, expressed
LOC_Os12g38110Os.56154.1.S1_s_at4/1112+23369158..23375239Importin-beta N-terminal domain containing protein, expressed
LOC_Os12g38120Os.52605.1.S1_at11/1112+23376512..23377537Thaumatin family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006878biological_processcopper ion homeostasis
GO:0005507molecular_functioncopper ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37783.2.S1_x_at--145--3271Chr12:23357754..23357778 (25 bp)
CAACTGCGGTTCTTGCGGCTGCGGC
LOC_Os12g38064
Os.37783.2.S1_x_at--925--2551Chr12:23357142..23357166 (25 bp)
AACTGCTAAGGCCAAGATGATCTAT
LOC_Os12g38064
Os.37783.2.S1_x_at--58--6432Chr12:23482246..23482270 (25 bp)
GATCTATGACTGAATTGCCAATGCA
LOC_Os12g38300
Os.37783.2.S1_x_at--252--5732Chr12:23482253..23482277 (25 bp)
GACTGAATTGCCAATGCACCAGCCT
LOC_Os12g38300
Os.37783.2.S1_x_at--52--5092Chr12:23482268..23482292 (25 bp)
GCACCAGCCTGTCTACATGATGAAT
LOC_Os12g38300
Os.37783.2.S1_x_at--728--7431Chr12:23357031..23357055 (25 bp)
GTGTTTGTCTCAACCATGTGCGAAT
LOC_Os12g38064
Os.37783.2.S1_x_at--37--9531Chr12:23357024..23357048 (25 bp)
TCTCAACCATGTGCGAATCAGGTGT
LOC_Os12g38064
Os.37783.2.S1_x_at--391--3071Chr12:23357009..23357033 (25 bp)
AATCAGGTGTCAAAAGTCCGTGGCT
LOC_Os12g38064
Os.37783.2.S1_x_at--469--1051Chr12:23357005..23357029 (25 bp)
AGGTGTCAAAAGTCCGTGGCTGGAA
LOC_Os12g38064
Os.37783.2.S1_x_at--900--7071Chr12:23357001..23357025 (25 bp)
GTCAAAAGTCCGTGGCTGGAAATCA
LOC_Os12g38064
Os.37783.2.S1_x_at--559--7251Chr12:23356994..23357018 (25 bp)
GTCCGTGGCTGGAAATCAATGTGGT
LOC_Os12g38064
Target Sequence 
CAACTGCGGTTCTTGCGGCTGCGGCGGTGGCTGTGGAAAGATGTACCCTGACCTGGCTGAGAAGATCAACACCACCATCA
CTACTGCAACCACTGTCCTCGGTGTTGCACCTGAGAAGGGGCATTTTGAGGTGATGGTTGGCAAGGCAGGTGAGTCTGGT
GAGGCTGCCCATGGCTGCAGCTGTGGCTCCAGCTGCAAGTGCAACCCCTGCAACTGCTAAGGCCAAGATGATCTATGACT
GAATTGCCAATGCACCAGCCTGTCTACATGATGAATAAATAAAGAGTCCATCCAGTGTGATGGCTCATGCCTGTGTGTGT
GTGTGTTTGTCTCAACCATGTGCGAATCAGGTGTCAAAAGTCCGTGGCTGGAAATCAATGTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37783.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis