Browse Element(s) Details


OsAffx.7828.1.S1_at

Description tigr:9640.m03702
TID=OsAffx.7828.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3809011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g38030OsAffx.22848.4.S1_at2/1112+23332989..23338947retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g38030OsAffx.22848.4.S1_x_at1/1112+23332989..23338947retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g38040Os.54670.1.S1_at10/1112+23342823..23345765Zinc knuckle family protein, expressed
LOC_Os12g38040Os.9279.1.S1_at1/1112+23342823..23345765Zinc knuckle family protein, expressed
LOC_Os12g38064Os.37783.2.S1_x_at11/1112+23349649..23357887Metallothionein-like protein 1, putative, expressed
LOC_Os12g38064OsAffx.7826.1.S1_at11/1112+23349649..23357887Metallothionein-like protein 1, putative, expressed
LOC_Os12g38064Os.37783.1.S1_a_at11/1112+23349649..23357887Metallothionein-like protein 1, putative, expressed
LOC_Os12g38064OsAffx.13220.1.S1_at1/1112+23349649..23357887Metallothionein-like protein 1, putative, expressed
LOC_Os12g38064OsAffx.4897.1.A1_at1/1112+23349649..23357887Metallothionein-like protein 1, putative, expressed
LOC_Os12g38090OsAffx.7828.1.S1_at11/1112+23360442..23361839F-box domain containing protein
LOC_Os12g38100OsAffx.7829.1.S1_at11/1112+23365498..23366323expressed protein
LOC_Os12g38110Os.3382.1.S1_at11/1112+23369158..23375239Importin-beta N-terminal domain containing protein, expressed
LOC_Os12g38110Os.47880.1.A1_at11/1112+23369158..23375239Importin-beta N-terminal domain containing protein, expressed
LOC_Os12g38110Os.22820.1.A1_at5/1112+23369158..23375239Importin-beta N-terminal domain containing protein, expressed
LOC_Os12g38110Os.56154.1.S1_s_at4/1112+23369158..23375239Importin-beta N-terminal domain containing protein, expressed
LOC_Os12g38120Os.52605.1.S1_at11/1112+23376512..23377537Thaumatin family protein, expressed
LOC_Os12g38130NANA12+23384971..23385219hypothetical protein
LOC_Os12g38140Os.11513.1.S1_at11/1112+23386517..23387326expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7828.1.S1_at--620--9971Chr12:23360968..23360992 (25 bp)
TACCATCGGCCGATCAGAACGGAGA
LOC_Os12g38090
OsAffx.7828.1.S1_at--777--1031Chr12:23360874..23360898 (25 bp)
AGGTCGGCAAGAGCTCTGGCTGTAC
LOC_Os12g38090
OsAffx.7828.1.S1_at--849--5931Chr12:23360804..23360828 (25 bp)
GAGCAGCGGTTCAGCATCGCCGTGT
LOC_Os12g38090
OsAffx.7828.1.S1_at--859--3951Chr12:23360773..23360797 (25 bp)
CGGACGCCATGTACCTGCCATTGGG
LOC_Os12g38090
OsAffx.7828.1.S1_at--227--531Chr12:23360731..23360755 (25 bp)
ATCGACTGCTTCTTCAGAAGGGTGT
LOC_Os12g38090
OsAffx.7828.1.S1_at--917--5311Chr12:23360715..23360739 (25 bp)
GAAGGGTGTACACCTGTACCACCAT
LOC_Os12g38090
OsAffx.7828.1.S1_at--594--10731Chr12:23360632..23360656 (25 bp)
TTGAATGGAGTTTCCCGGGAGAGCC
LOC_Os12g38090
OsAffx.7828.1.S1_at--583--1371Chr12:23360613..23360637 (25 bp)
AGAGCCCTACGCGTTCATGGTGATC
LOC_Os12g38090
OsAffx.7828.1.S1_at--904--9151Chr12:23360559..23360583 (25 bp)
TGCCGCGAGGCCCATTAACAAGACA
LOC_Os12g38090
OsAffx.7828.1.S1_at--961--691Chr12:23360495..23360519 (25 bp)
ATGATGGCGACACCGGAAAGGCCCA
LOC_Os12g38090
OsAffx.7828.1.S1_at--162--2311Chr12:23360479..23360503 (25 bp)
AAAGGCCCAAGCGTGCGCGTCGAGC
LOC_Os12g38090
Target Sequence 
TACCATCGGCCGATCAGAACGGAGAGCCGCCACCACCACCACCGCCATTGCTGTCCGAGCTCGACGGCGAGCTGTGCCTC
GGGCTGCTCGTGTCAGGTCGGCAAGAGCTCTGGCTGTACAGCAACAATGGCGGCGGCGGCGGCGGCGATGATCGGTGGCA
ATGGGAGCAGCGGTTCAGCATCGCCGTGTCGGGGCCGGACGCCATGTACCTGCCATTGGGGGTGCTTCGCCGCCATGATC
GACTGCTTCTTCAGAAGGGTGTACACCTGTACCACCATGACTCGGGTGGTGGCGAGGAGAGTGTCAGAGAAGTGGCGCGA
ATGGATGAGTTCGAATTTGAATGGAGTTTCCCGGGAGAGCCCTACGCGTTCATGGTGATCCCCTACACGGAGAGCCTTGT
CCGGGTTACTGCCGCGAGGCCCATTAACAAGACAGCGGCGGCGACGGCGATGGCGGGGGAGACGGCGGCGACGATGATGG
CGACACCGGAAAGGCCCAAGCGTGCGCGTCGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7828.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis