Browse Element(s) Details


Os.52605.1.S1_at

Description gb:AK068276.1
DB_XREF= gi:32978294
TID=Os.52605.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52605 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013136G04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013136G04, full insert sequence.
FL= gb:AK068276.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3812011/11Thaumatin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g38064Os.37783.2.S1_x_at11/1112+23349649..23357887Metallothionein-like protein 1, putative, expressed
LOC_Os12g38064OsAffx.7826.1.S1_at11/1112+23349649..23357887Metallothionein-like protein 1, putative, expressed
LOC_Os12g38064Os.37783.1.S1_a_at11/1112+23349649..23357887Metallothionein-like protein 1, putative, expressed
LOC_Os12g38064OsAffx.13220.1.S1_at1/1112+23349649..23357887Metallothionein-like protein 1, putative, expressed
LOC_Os12g38064OsAffx.4897.1.A1_at1/1112+23349649..23357887Metallothionein-like protein 1, putative, expressed
LOC_Os12g38090OsAffx.7828.1.S1_at11/1112+23360442..23361839F-box domain containing protein
LOC_Os12g38100OsAffx.7829.1.S1_at11/1112+23365498..23366323expressed protein
LOC_Os12g38110Os.3382.1.S1_at11/1112+23369158..23375239Importin-beta N-terminal domain containing protein, expressed
LOC_Os12g38110Os.47880.1.A1_at11/1112+23369158..23375239Importin-beta N-terminal domain containing protein, expressed
LOC_Os12g38110Os.22820.1.A1_at5/1112+23369158..23375239Importin-beta N-terminal domain containing protein, expressed
LOC_Os12g38110Os.56154.1.S1_s_at4/1112+23369158..23375239Importin-beta N-terminal domain containing protein, expressed
LOC_Os12g38120Os.52605.1.S1_at11/1112+23376512..23377537Thaumatin family protein, expressed
LOC_Os12g38130NANA12+23384971..23385219hypothetical protein
LOC_Os12g38140Os.11513.1.S1_at11/1112+23386517..23387326expressed protein
LOC_Os12g38150Os.6116.1.S1_x_at11/1112+23394201..23395189thaumatin-like cytokinin-binding protein, putative, expressed
LOC_Os12g38150Os.6116.1.S1_at11/1112+23394201..23395189thaumatin-like cytokinin-binding protein, putative, expressed
LOC_Os12g38160OsAffx.32078.1.S1_at11/1112+23396535..23397786hypothetical protein
LOC_Os12g38170Os.17108.1.S1_at11/1112+23401918..23403053Pathogenesis-related protein 5 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0042828biological_processresponse to pathogen
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52605.1.S1_at--928--1631Chr12:23377204..23377228 (25 bp)
AGCGACATGCTCATCCGTACCGTCG
LOC_Os12g38120
Os.52605.1.S1_at--765--2771Chr12:23377275..23377299 (25 bp)
AAGAGAAATCCCGTGCCTAATGCTG
LOC_Os12g38120
Os.52605.1.S1_at--553--4751Chr12:23377296..23377320 (25 bp)
GCTGACGCATGCATGGGCTTAATAA
LOC_Os12g38120
Os.52605.1.S1_at--248--9791Chr12:23377338..23377362 (25 bp)
TAAGCTGTGGCTTTGAGCATGTTAA
LOC_Os12g38120
Os.52605.1.S1_at--539--9391Chr12:23377390..23377414 (25 bp)
TCGATCTGTGGCTGTGGAGATGTAA
LOC_Os12g38120
Os.52605.1.S1_at--610--8051Chr12:23377405..23377429 (25 bp)
GGAGATGTAATTAGCTCGAGCTTTG
LOC_Os12g38120
Os.52605.1.S1_at--123--9371Chr12:23377420..23377444 (25 bp)
TCGAGCTTTGGCTTGGAGCATACTT
LOC_Os12g38120
Os.52605.1.S1_at--529--5931Chr12:23377435..23377459 (25 bp)
GAGCATACTTGGTGTTCGTCTGTGT
LOC_Os12g38120
Os.52605.1.S1_at--4--4031Chr12:23377451..23377475 (25 bp)
CGTCTGTGTTGTTTTTCGATGTGCT
LOC_Os12g38120
Os.52605.1.S1_at--466--6811Chr12:23377461..23377485 (25 bp)
GTTTTTCGATGTGCTACGCCATTAG
LOC_Os12g38120
Os.52605.1.S1_at--675--6911Chr12:23377513..23377537 (25 bp)
GTATGAAATTTCTCGTGTTGTGATG
LOC_Os12g38120
Target Sequence 
AGCGACATGCTCATCCGTACCGTCGTCGCCTCCAGCTAGATCGCTCGCTTCGCCGGCGAGACGACGGCGAGAAGAGAAAT
CCCGTGCCTAATGCTGACGCATGCATGGGCTTAATAATAAATTAATTAATCAATTAAGCTGTGGCTTTGAGCATGTTAAT
TACTACTTAATTAATCTTAATTAGCATCGATCTGTGGCTGTGGAGATGTAATTAGCTCGAGCTTTGGCTTGGAGCATACT
TGGTGTTCGTCTGTGTTGTTTTTCGATGTGCTACGCCATTAGCAATGGCTAGCAAAAAATAATCAATCAGTATGAAATTT
CTCGTGTTGTGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52605.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis