Browse Element(s) Details


Os.17108.1.S1_at

Description gb:AK066624.1
DB_XREF= gi:32976642
TID=Os.17108.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17108 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013071O05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013071O05, full insert sequence.
FL= gb:AK066624.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3817011/11Pathogenesis-related protein 5 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g38120Os.52605.1.S1_at11/1112+23376512..23377537Thaumatin family protein, expressed
LOC_Os12g38130NANA12+23384971..23385219hypothetical protein
LOC_Os12g38140Os.11513.1.S1_at11/1112+23386517..23387326expressed protein
LOC_Os12g38150Os.6116.1.S1_x_at11/1112+23394201..23395189thaumatin-like cytokinin-binding protein, putative, expressed
LOC_Os12g38150Os.6116.1.S1_at11/1112+23394201..23395189thaumatin-like cytokinin-binding protein, putative, expressed
LOC_Os12g38160OsAffx.32078.1.S1_at11/1112+23396535..23397786hypothetical protein
LOC_Os12g38170Os.17108.1.S1_at11/1112+23401918..23403053Pathogenesis-related protein 5 precursor, putative, expressed
LOC_Os12g38180Os.50671.1.S1_x_at11/1112+23408631..23413654Heat shock cognate 70 kDa protein 2, putative, expressed
LOC_Os12g38180Os.38164.1.S2_at11/1112+23408631..23413654Heat shock cognate 70 kDa protein 2, putative, expressed
LOC_Os12g38180Os.38164.1.S1_at11/1112+23408631..23413654Heat shock cognate 70 kDa protein 2, putative, expressed
LOC_Os12g38190OsAffx.32079.1.S1_x_at11/1112+23418670..23420572hypothetical protein
LOC_Os12g38190OsAffx.16036.1.S1_x_at1/1112+23418670..23420572hypothetical protein
LOC_Os12g38200OsAffx.20006.1.S1_at11/1112+23425400..23426830Dof domain, zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009627biological_processsystemic acquired resistance
GO:0042828biological_processresponse to pathogen
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17108.1.S1_at--358--5911Chr12:23402497..23402521 (25 bp)
GAGCTACTTCAAGCAGCGGTGCCCG
LOC_Os12g38170
Os.17108.1.S1_at--852--1891Chr12:23402649..23402673 (25 bp)
ACGTCGCCGACAACTAGCTAGCCTA
LOC_Os12g38170
Os.17108.1.S1_at--560--9731Chr12:23402762..23402786 (25 bp)
TAATTACTCCGGTTGGCCCGCGCTA
LOC_Os12g38170
Os.17108.1.S1_at--205--6611Chr12:23402773..23402797 (25 bp)
GTTGGCCCGCGCTAACTGCTAATAA
LOC_Os12g38170
Os.17108.1.S1_at--877--9951Chr12:23402840..23402864 (25 bp)
TACCCTTATGTTTGTACGTGCGCAT
LOC_Os12g38170
Os.17108.1.S1_at--485--7291Chr12:23402857..23402881 (25 bp)
GTGCGCATATACGTGTTTTAATTAC
LOC_Os12g38170
Os.17108.1.S1_at--493--2091Chr12:23402895..23402919 (25 bp)
ACATACTTGTGTACGTACGTCTACA
LOC_Os12g38170
Os.17108.1.S1_at--660--1891Chr12:23402911..23402935 (25 bp)
ACGTCTACATCGTATATTCGTATTG
LOC_Os12g38170
Os.17108.1.S1_at--602--7431Chr12:23402935..23402959 (25 bp)
GTGTTTTTGTGTAACTCGATCTAGT
LOC_Os12g38170
Os.17108.1.S1_at--2--6931Chr12:23402969..23402993 (25 bp)
GTATGTATCCGTCCATAGTGATATT
LOC_Os12g38170
Os.17108.1.S1_at--1036--3711Chr12:23402996..23403020 (25 bp)
CTACTACTACCTCTGCTTATTAATT
LOC_Os12g38170
Target Sequence 
GAGCTACTTCAAGCAGCGGTGCCCGCTGACGAGGACGGGCGGGGGCGACGTGGAGCCCGTGCCGCAGCACTGCATCTCCC
CCGGCGAGATCAAGCTCGTCTTCTGCCAGGCCGCCATGGTCGCCGGCGAGCCGGAGCTCATCCGCACCGTCGACGTCGCC
GACAACTAGCTAGCCTAGCCGGCCGGTCCGTTAATTAATTACGTGTGTTTTAATTAGTGCGTGTTTAACTAGTTAATCAG
ATCATCAAGCAGTTAANTAATTAATTAATTAATTACTCCGGTTGGCCCGCGCTAACTGCTAATAAGTGCACANTGGAATA
ACNAAGGCGGGGTACGTACATATGTACGTACCCTTATGTTTGTACGTGCGCATATACGTGTTTTAATTACTCTAGTATTG
TATACATACTTGTGTACGTACGTCTACATCGTATATTCGTATTGTGTTTTTGTGTAACTCGATCTAGTAATCCNACNAGT
ATGTATCCGTCCATAGTGATATTACCTACTACTACCTCTGCTTATTAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17108.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis