Browse Element(s) Details


OsAffx.32079.1.S1_x_at

Description tigr:9640.m03712
TID=OsAffx.32079.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3819011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g38150Os.6116.1.S1_x_at11/1112+23394201..23395189thaumatin-like cytokinin-binding protein, putative, expressed
LOC_Os12g38150Os.6116.1.S1_at11/1112+23394201..23395189thaumatin-like cytokinin-binding protein, putative, expressed
LOC_Os12g38160OsAffx.32078.1.S1_at11/1112+23396535..23397786hypothetical protein
LOC_Os12g38170Os.17108.1.S1_at11/1112+23401918..23403053Pathogenesis-related protein 5 precursor, putative, expressed
LOC_Os12g38180Os.50671.1.S1_x_at11/1112+23408631..23413654Heat shock cognate 70 kDa protein 2, putative, expressed
LOC_Os12g38180Os.38164.1.S2_at11/1112+23408631..23413654Heat shock cognate 70 kDa protein 2, putative, expressed
LOC_Os12g38180Os.38164.1.S1_at11/1112+23408631..23413654Heat shock cognate 70 kDa protein 2, putative, expressed
LOC_Os12g38190OsAffx.32079.1.S1_x_at11/1112+23418670..23420572hypothetical protein
LOC_Os12g38190OsAffx.16036.1.S1_x_at1/1112+23418670..23420572hypothetical protein
LOC_Os12g38200OsAffx.20006.1.S1_at11/1112+23425400..23426830Dof domain, zinc finger family protein, expressed
LOC_Os12g38210Os.6980.1.S1_at11/1112+23434652..23439842Spotted leaf protein 11, putative, expressed
LOC_Os12g38210OsAffx.8265.1.A1_at1/1112+23434652..23439842Spotted leaf protein 11, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32079.1.S1_x_at--84--7051Chr12:23419986..23420010 (25 bp)
GTAAACCCGTAGCAATCTTTCACAC
LOC_Os12g38190
OsAffx.32079.1.S1_x_at--903--6012Chr12:23420031..23420055 (25 bp)
GAGAGATAATTCCACGCGCTGGTCC
LOC_Os12g38190
OsAffx.32079.1.S1_x_at--474--1351Chr12:23420110..23420134 (25 bp)
AGAGATAATTGCACGCGCTGGTCCT
LOC_Os12g38190
OsAffx.32079.1.S1_x_at--624--1491Chr12:23420141..23420165 (25 bp)
AGCAAATCCGTAGCAATCTCTCACA
LOC_Os12g38190
OsAffx.32079.1.S1_x_at--437--1351Chr12:23420188..23420212 (25 bp)
AGAGATAATTCCACACGCTGGTCCT
LOC_Os12g38190
OsAffx.32079.1.S1_x_at--792--1797Chr12:23420243..23420267 (25 bp)
ACCGCGACTTCCATTGGTGCTAGAG
LOC_Os12g38190
OsAffx.32079.1.S1_x_at--704--1272Chr12:23420346..23420370 (25 bp)
AGATAATTCTATGCGCTGGTCCTCG
LOC_Os12g38190
OsAffx.32079.1.S1_x_at--1153--4777Chr12:23420399..23420423 (25 bp)
GCTGCGACTTCCATTGGTGCTAGAG
LOC_Os12g38190
OsAffx.32079.1.S1_x_at--279--1272Chr12:23420422..23420446 (25 bp)
AGATATAATTCTACGCGCTGGTCCT
LOC_Os12g38190
OsAffx.32079.1.S1_x_at--1073--1154Chr12:23420453..23420477 (25 bp)
AGTAAACCCGTAGCAATCTCTCACA
LOC_Os12g38190
OsAffx.32079.1.S1_x_at--904--6012Chr12:23420265..23420289 (25 bp)
GAGAGATAATTCTACGCGCTGGTTC
LOC_Os12g38190
Target Sequence 
GTAAACCCGTAGCAATCTTTCACACCACGACTTCCATTGGTGCTAGAGAGATAATTCCACGCGCTGGTCCTCGAACCAGC
AAACCCGTAGCAATCTCTCACACCGCGACTTCCATTGGTGCTAGAGAGATAATTGCACGCGCTGGTCCTCGAACCAGCAA
ATCCGTAGCAATCTCTCACACCGCGACTTCCATTGGTGTTAGAGAGATAATTCCACACGCTGGTCCTCGAACCAGCAAAC
CCGTAGCAATCTCTCACACCGCGACTTCCATTGGTGCTAGAGAGATAATTCTACGCGCTGGTTCTCGAACCAGTAAACCC
GTAGCAATCGCTCACACCGTGACTTCCATTGGTGCTAGAGAGATAATTCTATGCGCTGGTCCTCGAACCAGCAAACCCGT
AGCAATCTCTCACGCTGCGACTTCCATTGGTGCTAGAGATATAATTCTACGCGCTGGTCCTCGAACCAGTAAACCCGTAG
CAATCTCTCACACCGCGACTTCCATTGGTGCTCGAGAGATAATTCTACGCGCTGGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32079.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis