Browse Element(s) Details


Os.6116.1.S1_at

Description gb:CF329533
DB_XREF= gi:33807306
DB_XREF=NACL--04-O08.g1
CLONE=NACL--04-O08
TID=Os.6116.1
CNT=21
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.6116 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_180445.1 (A.thaliana) putative thaumatin (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3815011/11thaumatin-like cytokinin-binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g38110Os.3382.1.S1_at11/1112+23369158..23375239Importin-beta N-terminal domain containing protein, expressed
LOC_Os12g38110Os.47880.1.A1_at11/1112+23369158..23375239Importin-beta N-terminal domain containing protein, expressed
LOC_Os12g38110Os.22820.1.A1_at5/1112+23369158..23375239Importin-beta N-terminal domain containing protein, expressed
LOC_Os12g38110Os.56154.1.S1_s_at4/1112+23369158..23375239Importin-beta N-terminal domain containing protein, expressed
LOC_Os12g38120Os.52605.1.S1_at11/1112+23376512..23377537Thaumatin family protein, expressed
LOC_Os12g38130NANA12+23384971..23385219hypothetical protein
LOC_Os12g38140Os.11513.1.S1_at11/1112+23386517..23387326expressed protein
LOC_Os12g38150Os.6116.1.S1_x_at11/1112+23394201..23395189thaumatin-like cytokinin-binding protein, putative, expressed
LOC_Os12g38150Os.6116.1.S1_at11/1112+23394201..23395189thaumatin-like cytokinin-binding protein, putative, expressed
LOC_Os12g38160OsAffx.32078.1.S1_at11/1112+23396535..23397786hypothetical protein
LOC_Os12g38170Os.17108.1.S1_at11/1112+23401918..23403053Pathogenesis-related protein 5 precursor, putative, expressed
LOC_Os12g38180Os.50671.1.S1_x_at11/1112+23408631..23413654Heat shock cognate 70 kDa protein 2, putative, expressed
LOC_Os12g38180Os.38164.1.S2_at11/1112+23408631..23413654Heat shock cognate 70 kDa protein 2, putative, expressed
LOC_Os12g38180Os.38164.1.S1_at11/1112+23408631..23413654Heat shock cognate 70 kDa protein 2, putative, expressed
LOC_Os12g38190OsAffx.32079.1.S1_x_at11/1112+23418670..23420572hypothetical protein
LOC_Os12g38190OsAffx.16036.1.S1_x_at1/1112+23418670..23420572hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0042828biological_processresponse to pathogen
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6116.1.S1_at--348--7591Chr12:23394764..23394788 (25 bp)
GGGCACGGCGGACTACTTCAAGGCG
LOC_Os12g38150
Os.6116.1.S1_at--134--8211Chr12:23395029..23395053 (25 bp)
GGAATAATAATGACAGTGCGTATAC
LOC_Os12g38150
Os.6116.1.S1_at--616--5651Chr12:23395040..23395064 (25 bp)
GACAGTGCGTATACACGTATGTGTA
LOC_Os12g38150
Os.6116.1.S1_at--95--9871Chr12:23395051..23395075 (25 bp)
TACACGTATGTGTACACCGTATGTC
LOC_Os12g38150
Os.6116.1.S1_at--608--1891Chr12:23395054..23395078 (25 bp)
ACGTATGTGTACACCGTATGTCGAC
LOC_Os12g38150
Os.6116.1.S1_at--515--791Chr12:23395058..23395082 (25 bp)
ATGTGTACACCGTATGTCGACTGTA
LOC_Os12g38150
Os.6116.1.S1_at--968--7011Chr12:23395062..23395086 (25 bp)
GTACACCGTATGTCGACTGTACGCG
LOC_Os12g38150
Os.6116.1.S1_at--854--6971Chr12:23395086..23395110 (25 bp)
GTACGGACGGGCACAGTCTGGTATT
LOC_Os12g38150
Os.6116.1.S1_at--89--9291Chr12:23395087..23395111 (25 bp)
TACGGACGGGCACAGTCTGGTATTA
LOC_Os12g38150
Os.6116.1.S1_at--886--6611Chr12:23395114..23395138 (25 bp)
GTTGTACGTGTACAATCTACGACGT
LOC_Os12g38150
Os.6116.1.S1_at--213--1911Chr12:23395119..23395143 (25 bp)
ACGTGTACAATCTACGACGTATTTT
LOC_Os12g38150
Target Sequence 
GGGCACGGCGGACTACTTCAAGGCGCGGTGCCCGCTGACGAGGACGACGGGGAGCGACGTCGAGCCCGTGCCGCAGCACT
GCCTCGCCCCCGGCGAGCTCAAGGTCGTCTTCTGCCAGCCGTCCATGGTCGCCGCCGCCGTGCCGGAGCTCATCCGCACC
GTCGTCGCCAACATCTAGCTGTGTGTGAGGTCCTCGTCGTGCACACGTGGCGCGTCCTGCGTGCGCCACGTGTACGGACT
AGCTGTGTGTANAAGTGGGTAGGGGGGAATAATAATGACAGTGCGTATACACGTATGTGTACACCGTATGTCGACTGTAC
GCGTACGGACGGGCACAGTCTGGTATTAGTGTTGTACGTGTACAATCTACGACGTATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6116.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis